RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 RRAGDQ9NQL2 400 aaPredicted RBP17.56■□□□□ 0.4
TPM3-206ENST00000330188 PAPPAQ13219 1627 aa17.56■□□□□ 0.4
TPM3-206ENST00000330188 ABCA3Q99758 1704 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 PCDH11XQ9BZA7 1347 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 PCDH11YQ9BZA8 1340 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 COL5A2P05997 1499 aaPredicted RBP17.55■□□□□ 0.4
TPM3-206ENST00000330188 PTPN12Q05209 780 aaKnown RBP17.55■□□□□ 0.4
TPM3-206ENST00000330188 NMIQ13287 307 aaPredicted RBP17.55■□□□□ 0.4
TPM3-206ENST00000330188 ZSCAN23Q3MJ62 389 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 PRPF40BQ6NWY9 871 aaKnown RBP17.55■□□□□ 0.4
TPM3-206ENST00000330188 PLBD2Q8NHP8 589 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 FAM227BQ96M60 508 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 BOLA2Q9H3K6 86 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 PRDM11Q9NQV5 511 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 SNRKQ9NRH2 765 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 NUP188Q5SRE5 1749 aa17.55■□□□□ 0.4
TPM3-206ENST00000330188 ATP5J2-PTCD1G3V325 749 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 PTCD1O75127 700 aaKnown RBP17.54■□□□□ 0.4
TPM3-206ENST00000330188 CASTP20810 708 aaKnown RBP17.54■□□□□ 0.4
TPM3-206ENST00000330188 NECTIN1Q15223 517 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 UBE3BQ7Z3V4 1068 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 ZCRB1Q8TBF4 217 aaKnown RBP17.54■□□□□ 0.4
TPM3-206ENST00000330188 SHANK3Q9BYB0 1731 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 LIMCH1Q9UPQ0 1083 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 RPAP1Q9BWH6 1393 aaPredicted RBP17.54■□□□□ 0.4
TPM3-206ENST00000330188 ERBB4Q15303 1308 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 CPA1P15085 419 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 CASP7P55210 303 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 TOM1L2Q6ZVM7 507 aa17.54■□□□□ 0.4
TPM3-206ENST00000330188 SOS2Q07890 1332 aaPredicted RBP17.53■□□□□ 0.4
TPM3-206ENST00000330188 KCPQ6ZWJ8 1503 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 ADCK5Q3MIX3 580 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 TM6SF1Q9BZW5 370 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 A0A087WZG4 1122 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 NBPF26B4DH59 902 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 NBPF14Q5TI25 921 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 NBPF10Q6P3W6 841 aaKnown RBP17.53■□□□□ 0.4
TPM3-206ENST00000330188 NBPF15Q8N660 670 aa17.53■□□□□ 0.4
TPM3-206ENST00000330188 RBM27Q9P2N5 1060 aaKnown RBP17.53■□□□□ 0.4
TPM3-206ENST00000330188 STRCQ7RTU9 1775 aa17.52■□□□□ 0.4
TPM3-206ENST00000330188 WDR33Q9C0J8 1336 aaKnown RBP17.52■□□□□ 0.4
TPM3-206ENST00000330188 MAP4K1Q92918 833 aa17.52■□□□□ 0.4
TPM3-206ENST00000330188 JAKMIP1Q96N16 626 aaKnown RBP17.52■□□□□ 0.4
TPM3-206ENST00000330188 LARP6Q9BRS8 491 aaKnown RBP17.52■□□□□ 0.4
TPM3-206ENST00000330188 FSD1Q9BTV5 496 aa17.52■□□□□ 0.4
TPM3-206ENST00000330188 ZSWIM6Q9HCJ5 1215 aa17.52■□□□□ 0.4
TPM3-206ENST00000330188 NSFL1CQ9UNZ2 370 aaKnown RBP17.52■□□□□ 0.4
TPM3-206ENST00000330188 RBM8AQ9Y5S9 174 aaKnown RBP17.52■□□□□ 0.4
TPM3-206ENST00000330188 TJP1Q07157 1748 aa17.52■□□□□ 0.39
TPM3-206ENST00000330188 MED23Q9ULK4 1368 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 A0A0D9SFI3 127 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 ERVV-2B6SEH9 535 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 TNNI3KQ59H18 835 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 VPS53Q5VIR6 699 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 FPGT-TNNI3KV9GXZ4 949 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 TFCP2Q12800 502 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 NKX1-1Q15270 411 aaPredicted RBP17.51■□□□□ 0.39
TPM3-206ENST00000330188 CREB3L3Q68CJ9 461 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 PDRG1Q9NUG6 133 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 TMEM63CQ9P1W3 806 aa17.51■□□□□ 0.39
TPM3-206ENST00000330188 DBNLQ9UJU6 430 aaKnown RBP17.51■□□□□ 0.39
TPM3-206ENST00000330188 LARGE1O95461 756 aa17.5■□□□□ 0.39
TPM3-206ENST00000330188 MBD3O95983 291 aa17.5■□□□□ 0.39
TPM3-206ENST00000330188 NASPP49321 788 aaPredicted RBP17.5■□□□□ 0.39
TPM3-206ENST00000330188 CYP46A1Q9Y6A2 500 aa17.5■□□□□ 0.39
TPM3-206ENST00000330188 JCADQ9P266 1359 aa17.5■□□□□ 0.39
TPM3-206ENST00000330188 ATP5JP18859 108 aa17.5■□□□□ 0.39
TPM3-206ENST00000330188 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.5■□□□□ 0.39
TPM3-206ENST00000330188 ZKSCAN1P17029 563 aaPredicted RBP17.49■□□□□ 0.39
TPM3-206ENST00000330188 TTLL7Q6ZT98 887 aa17.49■□□□□ 0.39
TPM3-206ENST00000330188 CARD10Q9BWT7 1032 aa17.49■□□□□ 0.39
TPM3-206ENST00000330188 SLAIN2Q9P270 581 aa17.49■□□□□ 0.39
TPM3-206ENST00000330188 TCHHQ07283 1943 aa17.49■□□□□ 0.39
TPM3-206ENST00000330188 H7C1W4 665 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 SLC27A2O14975 620 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 IL2RBP14784 551 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 A1BGP04217 495 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 KCNJ4P48050 445 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 FOXO4P98177 505 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 LMBR1LQ6UX01 489 aa17.48■□□□□ 0.39
TPM3-206ENST00000330188 EDC3Q96F86 508 aaKnown RBP17.48■□□□□ 0.39
TPM3-206ENST00000330188 ZSCAN31Q96LW9 406 aaPredicted RBP17.48■□□□□ 0.39
TPM3-206ENST00000330188 TNS2Q63HR2 1409 aa17.47■□□□□ 0.39
TPM3-206ENST00000330188 TOGARAM1Q9Y4F4 1720 aa17.47■□□□□ 0.39
TPM3-206ENST00000330188 ZNF589Q86UQ0 364 aaPredicted RBP17.47■□□□□ 0.39
TPM3-206ENST00000330188 SMC3Q9UQE7 1217 aa17.47■□□□□ 0.39
TPM3-206ENST00000330188 ZSCAN22P10073 491 aaPredicted RBP17.47■□□□□ 0.39
TPM3-206ENST00000330188 PRIM1P49642 420 aaKnown RBP17.47■□□□□ 0.39
TPM3-206ENST00000330188 CCDC173Q0VFZ6 552 aa17.47■□□□□ 0.39
TPM3-206ENST00000330188 CCDC83Q8IWF9 413 aa17.47■□□□□ 0.39
TPM3-206ENST00000330188 SH2B1Q9NRF2 756 aaPredicted RBP17.47■□□□□ 0.39
TPM3-206ENST00000330188 STX6O43752 255 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 SYT1P21579 422 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 FOXD4L6Q3SYB3 417 aaPredicted RBP17.46■□□□□ 0.39
TPM3-206ENST00000330188 FOXD4L3Q6VB84 417 aaPredicted RBP17.46■□□□□ 0.39
TPM3-206ENST00000330188 DDX54Q8TDD1 881 aaKnown RBP17.46■□□□□ 0.39
TPM3-206ENST00000330188 PPP1R9BQ96SB3 815 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 DBNDD2Q9BQY9 259 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 RBSNQ9H1K0 784 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 CWC25Q9NXE8 425 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms