RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PNMA6EA0A0J9YXQ4 647 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 USPL1Q5W0Q7 1092 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 BICDL1Q6ZP65 573 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 NLRP10Q86W26 655 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 AMIGO3Q86WK7 504 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 BICC1Q9H694 974 aaKnown RBP12.48□□□□□ -0.41
HMGB3-201ENST00000325307 ZBTB47Q9UFB7 747 aaPredicted RBP12.48□□□□□ -0.41
HMGB3-201ENST00000325307 UTYO14607 1347 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.47□□□□□ -0.41
HMGB3-201ENST00000325307 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
HMGB3-201ENST00000325307 TRIM28Q13263 835 aaKnown RBP12.47□□□□□ -0.41
HMGB3-201ENST00000325307 FAM89AQ96GI7 184 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 TFCP2L1Q9NZI6 479 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 TRMT112Q9UI30 125 aaKnown RBP12.47□□□□□ -0.41
HMGB3-201ENST00000325307 C4BP0C0L5 1744 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 AFDNP55196 1824 aaKnown RBP12.47□□□□□ -0.41
HMGB3-201ENST00000325307 RREB1Q92766 1687 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 NARFQ9UHQ1 456 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 CHMP3Q9Y3E7 222 aa12.47□□□□□ -0.41
HMGB3-201ENST00000325307 RGS3P49796 1198 aa12.46□□□□□ -0.41
HMGB3-201ENST00000325307 GCC1Q96CN9 775 aa12.46□□□□□ -0.41
HMGB3-201ENST00000325307 H7C1W4 665 aa12.46□□□□□ -0.41
HMGB3-201ENST00000325307 BAG6P46379 1132 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 ANKRD45Q5TZF3 282 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 CLEC4GQ6UXB4 293 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 ZNF34Q8IZ26 560 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 PDZRN3Q9UPQ7 1066 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 TAF1LQ8IZX4 1826 aa12.46□□□□□ -0.42
HMGB3-201ENST00000325307 EZH2Q15910 746 aaKnown RBP12.45□□□□□ -0.42
HMGB3-201ENST00000325307 SMC5Q8IY18 1101 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 ZBTB38Q8NAP3 1195 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-201ENST00000325307 UBN2Q6ZU65 1347 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 PCCAP05165 728 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-201ENST00000325307 ADRA2BP18089 450 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 PARP10Q53GL7 1025 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 EPHA10Q5JZY3 1008 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 KAZALD1Q96I82 304 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 DCTPP1Q9H773 170 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 EXOC6BQ9Y2D4 811 aa12.45□□□□□ -0.42
HMGB3-201ENST00000325307 IBTKQ9P2D0 1353 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 SSFA2P28290 1259 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 UTP14AQ9BVJ6 771 aaKnown RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 CASP7P55210 303 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 OS9Q13438 667 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 SUSD4Q5VX71 490 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 SYNE4Q8N205 404 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 SSH3Q8TE77 659 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 NPHP1O15259 732 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 SURF6O75683 361 aaKnown RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 PDIA4P13667 645 aaKnown RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 GTF2E1P29083 439 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-201ENST00000325307 ZNF827Q17R98 1081 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 LMBR1LQ6UX01 489 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 DEFB132Q7Z7B7 95 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
HMGB3-201ENST00000325307 USP42Q9H9J4 1324 aaKnown RBP12.43□□□□□ -0.42
HMGB3-201ENST00000325307 NUP98P52948 1817 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 TBC1D9BQ66K14 1250 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 SETDB2Q96T68 719 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 IRS4O14654 1257 aaPredicted RBP12.43□□□□□ -0.42
HMGB3-201ENST00000325307 BCL2L12Q9HB09 334 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 TNS1Q9HBL0 1735 aaKnown RBP12.43□□□□□ -0.42
HMGB3-201ENST00000325307 MTX1Q13505 466 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 CCDC85AQ96PX6 553 aaPredicted RBP12.43□□□□□ -0.42
HMGB3-201ENST00000325307 CAMKK2Q96RR4 588 aa12.43□□□□□ -0.42
HMGB3-201ENST00000325307 SH3TC1Q8TE82 1336 aa12.42□□□□□ -0.42
HMGB3-201ENST00000325307 NUCB1Q02818 461 aa12.42□□□□□ -0.42
HMGB3-201ENST00000325307 POLA2Q14181 598 aa12.42□□□□□ -0.42
HMGB3-201ENST00000325307 CHD1LQ86WJ1 897 aa12.42□□□□□ -0.42
HMGB3-201ENST00000325307 DEKP35659 375 aaKnown RBP12.41□□□□□ -0.42
HMGB3-201ENST00000325307 NUTM1Q86Y26 1132 aa12.41□□□□□ -0.42
HMGB3-201ENST00000325307 PA2G4Q9UQ80 394 aaKnown RBP12.41□□□□□ -0.42
HMGB3-201ENST00000325307 FOXO4P98177 505 aa12.41□□□□□ -0.42
HMGB3-201ENST00000325307 NBPF5PQ86XG9 351 aaPredicted RBP12.41□□□□□ -0.42
HMGB3-201ENST00000325307 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
HMGB3-201ENST00000325307 SIL1Q9H173 461 aa12.41□□□□□ -0.42
HMGB3-201ENST00000325307 HCLS1P14317 486 aaPredicted RBP12.41□□□□□ -0.42
HMGB3-201ENST00000325307 RGL2O15211 777 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 SMARCA5O60264 1052 aaPredicted RBP12.4□□□□□ -0.42
HMGB3-201ENST00000325307 RABL6Q3YEC7 729 aaPredicted RBP12.4□□□□□ -0.42
HMGB3-201ENST00000325307 KLHDC4Q8TBB5 520 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 CDHR2Q9BYE9 1310 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 ANKRD36CQ5JPF3 1778 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 HSP90AB4PQ58FF6 505 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 NTSR2O95665 410 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 G3BP1Q13283 466 aaKnown RBP eCLIP12.4□□□□□ -0.42
HMGB3-201ENST00000325307 BACH2Q9BYV9 841 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 LRRCC1Q9C099 1032 aa12.4□□□□□ -0.42
HMGB3-201ENST00000325307 PDE8AO60658 829 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 HSP90B1P14625 803 aaKnown RBP12.39□□□□□ -0.43
HMGB3-201ENST00000325307 PDE4AP27815 886 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 CCDC57Q2TAC2 916 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 TAF7LQ5H9L4 462 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 FLAD1Q8NFF5 587 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 GYS1P13807 737 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 NYXQ9GZU5 481 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 BCORQ6W2J9 1755 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 CTSWP56202 376 aa12.39□□□□□ -0.43
HMGB3-201ENST00000325307 PDE4CQ08493 712 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms