RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 SPATA31A1Q5TZJ5 1347 aa10.27□□□□□ -0.77
PDLIM5-201ENST00000317968 KRT32Q14532 448 aa10.27□□□□□ -0.77
PDLIM5-201ENST00000317968 RGL2O15211 777 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 ATG3Q9NT62 314 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 SH3TC1Q8TE82 1336 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 UQCRFS1P1P0C7P4 283 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 IKQ13123 557 aaPredicted RBP10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 TRIM29Q14134 588 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 FAM98CQ17RN3 349 aaKnown RBP10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 MTX1Q13505 466 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 TTC39AQ5SRH9 613 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 USP16Q9Y5T5 823 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 NEURL1BA8MQ27 555 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 TTLL12Q14166 644 aaPredicted RBP10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 WASHC4Q2M389 1173 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 CTNNA3Q9UI47 895 aa10.26□□□□□ -0.77
PDLIM5-201ENST00000317968 RGS12O14924 1447 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 PDE1AP54750 535 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 TRIM28Q13263 835 aaKnown RBP10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 TNNQ9UQP3 1299 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 SPATA31A5Q5VU36 1347 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 SPATA31A7Q8IWB4 1347 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 KCNQ3O43525 872 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 PCCAP05165 728 aaPredicted RBP10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 RXRBP28702 533 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 TTF1Q15361 905 aaPredicted RBP10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 METTL24Q5JXM2 366 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 TPTE2Q6XPS3 522 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 GIGYF2Q6Y7W6 1299 aaKnown RBP10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 MAP3K15Q6ZN16 1313 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 ZFYP08048 801 aaPredicted RBP10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 SLC5A1P13866 664 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 ATP6V1DQ9Y5K8 247 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 RAD50Q92878 1312 aa10.25□□□□□ -0.77
PDLIM5-201ENST00000317968 LOC102724428A0A0B4J2F2 783 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 SIK1P57059 783 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 SART3Q15020 963 aaKnown RBP10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 LMBR1LQ6UX01 489 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 CNKSR2Q8WXI2 1034 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 TFCP2L1Q9NZI6 479 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 ATP5J2-PTCD1G3V325 749 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 IL1RAPL2Q9NP60 686 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 TPM4P67936 248 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 CCDC47Q96A33 483 aaKnown RBP10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 SETDB2Q96T68 719 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 GPR108Q9NPR9 543 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 CCNL1Q9UK58 526 aaPredicted RBP10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 PDE8AO60658 829 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 ANKRD1Q15327 319 aa10.24□□□□□ -0.77
PDLIM5-201ENST00000317968 FAM208AQ9UK61 1670 aaKnown RBP10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 NF2P35240 595 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 CLEC4GQ6UXB4 293 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 LDHAL6AQ6ZMR3 332 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 PIGBQ92521 554 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 ACSBG1Q96GR2 724 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 NLRP3Q96P20 1036 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 COPRSQ9NQ92 184 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 MYO1BO43795 1136 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 ANAPC15P60006 121 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 A1BGP04217 495 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 NUCB2P80303 420 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 CWF19L2Q2TBE0 894 aaKnown RBP10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 CAVIN4Q5BKX8 364 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 SIL1Q9H173 461 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 EYA2O00167 538 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 NACAP1Q9BZK3 213 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 OSBPL3Q9H4L5 887 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 CHMP5Q9NZZ3 219 aa10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 CIZ1Q9ULV3 898 aaPredicted RBP10.23□□□□□ -0.77
PDLIM5-201ENST00000317968 NFXL1Q6ZNB6 911 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 ZNF622Q969S3 477 aaKnown RBP eCLIP10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 ZNF287Q9HBT7 754 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 IBTKQ9P2D0 1353 aaPredicted RBP10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 LMOD1P29536 600 aaPredicted RBP10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 HDAC9Q9UKV0 1011 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 USP54Q70EL1 1684 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 ADRA2BP18089 450 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 DDX46Q7L014 1031 aaKnown RBP10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 NIP7Q9Y221 180 aaKnown RBP eCLIP10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 MEGF6O75095 1541 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 TRAPPC3LQ5T215 181 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 PLEKHM2Q8IWE5 1019 aa10.22□□□□□ -0.77
PDLIM5-201ENST00000317968 IRS4O14654 1257 aaPredicted RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 RALYLQ86SE5 291 aaKnown RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 ZBTB38Q8NAP3 1195 aaPredicted RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 QTRT2Q9H974 415 aaKnown RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 ANKIB1Q9P2G1 1089 aa10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 NBPF5PQ86XG9 351 aaPredicted RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 BRMS1Q9HCU9 246 aa10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 XBP1P17861 261 aa10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 ZSCAN29Q8IWY8 852 aaPredicted RBP10.21□□□□□ -0.77
PDLIM5-201ENST00000317968 KAT6BQ8WYB5 2073 aa10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 PHF14O94880 888 aa10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 ANKRD2Q9GZV1 360 aa10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 SAMD1Q6SPF0 538 aaPredicted RBP10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 GJD4Q96KN9 370 aaPredicted RBP10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 ZSCAN31Q96LW9 406 aaPredicted RBP10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 TNS2Q63HR2 1409 aa10.21□□□□□ -0.78
PDLIM5-201ENST00000317968 CIAO1O76071 339 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 GPTP24298 496 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms