RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 JCADQ9P266 1359 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 MPHOSPH10O00566 681 aaKnown RBP7.88□□□□□ -1.15
ZNF540-201ENST00000316433 PRPF40AO75400 957 aaKnown RBP7.88□□□□□ -1.15
ZNF540-201ENST00000316433 KCNB2Q92953 911 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 PYCARDQ9ULZ3 195 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 TRAK1Q9UPV9 953 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 RFX7Q2KHR2 1363 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 CCDC171Q6TFL3 1326 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 MAGEA9P43362 315 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 MAP9Q49MG5 647 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 TBC1D9Q6ZT07 1266 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 PLEKHM2Q8IWE5 1019 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 USP26Q9BXU7 913 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 MRVI1Q9Y6F6 885 aa7.88□□□□□ -1.15
ZNF540-201ENST00000316433 CCDC196A0A1B0GTZ2 297 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 MBD3O95983 291 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 HOXB7P09629 217 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 SLFNL1Q499Z3 407 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 CCDC112Q8NEF3 446 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 GAS2L2Q8NHY3 880 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 SRCIN1Q9C0H9 1055 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 TRPM3Q9HCF6 1732 aaPredicted RBP7.87□□□□□ -1.15
ZNF540-201ENST00000316433 ADCY5O95622 1261 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 TPM3P06753 285 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 FBXO38Q6PIJ6 1188 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 ZNF513Q8N8E2 541 aaPredicted RBP7.87□□□□□ -1.15
ZNF540-201ENST00000316433 FAM184AQ8NB25 1140 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 USP25Q9UHP3 1055 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 PAXBP1Q9Y5B6 917 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 WASLO00401 505 aaPredicted RBP7.87□□□□□ -1.15
ZNF540-201ENST00000316433 CEP89Q96ST8 783 aa7.87□□□□□ -1.15
ZNF540-201ENST00000316433 ALDH8A1Q9H2A2 487 aaPredicted RBP7.87□□□□□ -1.15
ZNF540-201ENST00000316433 CD2BP2O95400 341 aaKnown RBP7.86□□□□□ -1.15
ZNF540-201ENST00000316433 LIG1P18858 919 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 GPS2Q13227 327 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 GTF3C6Q969F1 213 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 DNAJC5Q9H3Z4 198 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 PKD1L3Q7Z443 1732 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 TMEM2Q9UHN6 1383 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 H0YHG0 523 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 SARNPP82979 210 aaKnown RBP7.86□□□□□ -1.15
ZNF540-201ENST00000316433 FBXO18Q8NFZ0 1043 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 TBC1D22AQ8WUA7 517 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 KCNF1Q9H3M0 494 aa7.86□□□□□ -1.15
ZNF540-201ENST00000316433 PAPPAQ13219 1627 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 TPM4P67936 248 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 ZC3H12AQ5D1E8 599 aaKnown RBP7.85□□□□□ -1.15
ZNF540-201ENST00000316433 GOLGA5Q8TBA6 731 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 CDK19Q9BWU1 502 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 MAP3K5Q99683 1374 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 NPM1P06748 294 aaKnown RBP eCLIP7.85□□□□□ -1.15
ZNF540-201ENST00000316433 GSPT1P15170 499 aaKnown RBP7.85□□□□□ -1.15
ZNF540-201ENST00000316433 CCT4P50991 539 aaKnown RBP7.85□□□□□ -1.15
ZNF540-201ENST00000316433 TNNQ9UQP3 1299 aa7.85□□□□□ -1.15
ZNF540-201ENST00000316433 RPAP1Q9BWH6 1393 aaPredicted RBP7.85□□□□□ -1.15
ZNF540-201ENST00000316433 HDGFP51858 240 aaKnown RBP7.84□□□□□ -1.15
ZNF540-201ENST00000316433 CASC1Q6TDU7 716 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 MMS22LQ6ZRQ5 1243 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 ITPRIPQ8IWB1 547 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 NBPF3Q9H094 633 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 MBIPQ9NS73 344 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 NSFL1CQ9UNZ2 370 aaKnown RBP7.84□□□□□ -1.15
ZNF540-201ENST00000316433 IGSF1Q8N6C5 1336 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 ZNF526Q8TF50 670 aaPredicted RBP7.84□□□□□ -1.15
ZNF540-201ENST00000316433 PPM1EQ8WY54 764 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 RTF1Q92541 710 aaKnown RBP7.84□□□□□ -1.15
ZNF540-201ENST00000316433 SMARCE1Q969G3 411 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 FAM210AQ96ND0 272 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 CEMIPQ8WUJ3 1361 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 FER1L4A9Z1Z3 1794 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 ALS2Q96Q42 1657 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 MAFGO15525 162 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 CEP85Q6P2H3 762 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 C16orf45Q96MC5 204 aaPredicted RBP7.84□□□□□ -1.15
ZNF540-201ENST00000316433 FHOD1Q9Y613 1164 aa7.84□□□□□ -1.15
ZNF540-201ENST00000316433 SCN11AQ9UI33 1791 aa7.84□□□□□ -1.16
ZNF540-201ENST00000316433 FLT4P35916 1363 aa7.84□□□□□ -1.16
ZNF540-201ENST00000316433 BRD1O95696 1058 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 IQUBQ8NA54 791 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 SYAP1Q96A49 352 aaPredicted RBP7.83□□□□□ -1.16
ZNF540-201ENST00000316433 PRAM1Q96QH2 718 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 PLA2G4AP47712 749 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 INHBEP58166 350 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 ST5P78524 1137 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 CABP2Q9NPB3 220 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 GLI3P10071 1580 aa7.83□□□□□ -1.16
ZNF540-201ENST00000316433 HMMRO75330 724 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 ELF2Q15723 593 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 RNF20Q5VTR2 975 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 HEG1Q9ULI3 1381 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 V9GYY5 206 aaPredicted RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 POLR3GO15318 223 aaPredicted RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 ST18O60284 1047 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 TWISTNBQ3B726 338 aaPredicted RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 OSCARQ8IYS5 282 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 TSR2Q969E8 191 aaKnown RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 ERO1AQ96HE7 468 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 ZNF215Q9UL58 517 aaPredicted RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 CCDC61Q9Y6R9 512 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 UBR2Q8IWV8 1755 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms