RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 PYM1Q9BRP8 204 aaKnown RBP11.88□□□□□ -0.51
CLIP1-201ENST00000302528 STMN4Q9H169 189 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-201ENST00000302528 EXOC6BQ9Y2D4 811 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 NAIPQ13075 1403 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 PHACTR2O75167 634 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 BACH2Q9BYV9 841 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 EHBP1L1Q8N3D4 1523 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 USP37Q86T82 979 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 ANKS4BQ8N8V4 417 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 KIAA1524Q8TCG1 905 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 SPAG5Q96R06 1193 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 BICRAQ9NZM4 1560 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 GSTA5Q7RTV2 222 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 VAT1LQ9HCJ6 419 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 DDX19AQ9NUU7 478 aaKnown RBP11.88□□□□□ -0.51
CLIP1-201ENST00000302528 RNF216Q9NWF9 866 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-201ENST00000302528 GMNNO75496 209 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 MX1P20591 662 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 TTC12Q9H892 705 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-201ENST00000302528 PCF11O94913 1555 aaKnown RBP11.87□□□□□ -0.51
CLIP1-201ENST00000302528 SLC5A1P13866 664 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 SELENOOQ9BVL4 669 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 KIF3CO14782 793 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 RAB11FIP3O75154 756 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 PANK2Q9BZ23 570 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 AKNAQ7Z591 1439 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 FAM69CQ0P6D2 419 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 WDR66Q8TBY9 1149 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 PRAM1Q96QH2 718 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 RSPH14Q9UHP6 348 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 PTPRGP23470 1445 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 MAPKBP1O60336 1514 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 KIF5BP33176 963 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 CABP5Q9NP86 173 aa11.87□□□□□ -0.51
CLIP1-201ENST00000302528 N4BP3O15049 544 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 KRT13P13646 458 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 GJC1P36383 396 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 EXOC1Q9NV70 894 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 PRPHP41219 470 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 KANK3Q6NY19 840 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 WDR63Q8IWG1 891 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 CWC25Q9NXE8 425 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 TXNDC16Q9P2K2 825 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 FEZ2Q9UHY8 353 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 BIVM-ERCC5R4GMW8 1640 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 CCT2P78371 535 aaKnown RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 GTPBP4Q9BZE4 634 aaKnown RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 CCDC110Q8TBZ0 833 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 RPGRQ92834 1020 aaKnown RBP11.86□□□□□ -0.51
CLIP1-201ENST00000302528 PPP1R9BQ96SB3 815 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 SELENOSQ9BQE4 189 aa11.86□□□□□ -0.51
CLIP1-201ENST00000302528 STIM2Q9P246 746 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 ZHX1Q9UKY1 873 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 TTC36A6NLP5 189 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 VTI1AQ96AJ9 217 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 MRVI1Q9Y6F6 885 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 IFIT5Q13325 482 aaKnown RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 TTF1Q15361 905 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CCDC14Q49A88 953 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CFAP157Q5JU67 520 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CEP57Q86XR8 500 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 PLEKHH1Q9ULM0 1364 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 IVLP07476 585 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 PLCB3Q01970 1234 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 ISM2Q6H9L7 571 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CCDC121Q6ZUS5 278 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CTAGE15A4D2H0 777 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 OPA1O60313 960 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CTAGE8P0CG41 777 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 EEF2P13639 858 aaKnown RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CYLC1P35663 651 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 IARSP41252 1262 aaKnown RBP11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CTAGE6Q86UF2 777 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 CTAGE4Q8IX94 777 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 KAT14Q9H8E8 782 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 PFDN4Q9NQP4 134 aa11.85□□□□□ -0.51
CLIP1-201ENST00000302528 ERMNQ8TAM6 284 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 SCAPERQ9BY12 1400 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 PIP4K2BP78356 416 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 FAM169AQ9Y6X4 670 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 CFAP70Q5T0N1 1121 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 MIPOL1Q8TD10 442 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 RMND1Q9NWS8 449 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.84□□□□□ -0.511e-6■■■■□ 20.3
CLIP1-201ENST00000302528 MYD88Q99836 296 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 IMPG2Q9BZV3 1241 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 LIMCH1Q9UPQ0 1083 aa11.84□□□□□ -0.51
CLIP1-201ENST00000302528 PTCD1O75127 700 aaKnown RBP11.83□□□□□ -0.52
CLIP1-201ENST00000302528 ZFYP08048 801 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC129Q6ZRS4 1044 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 TSPY2A6NKD2 308 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 ADCY5O95622 1261 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 TERF1P54274 439 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC50Q8IVM0 306 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 CDK19Q9BWU1 502 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC171Q6TFL3 1326 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms