RNA–Protein interactions for RNA: ENST00000299162.9

FOXN4-201, Transcript of forkhead box N4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXN4, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4-201ENST00000299162 ZNF594Q96JF6 807 aaPredicted RBP12.15□□□□□ -0.46
FOXN4-201ENST00000299162 DCAF5Q96JK2 942 aa12.15□□□□□ -0.46
FOXN4-201ENST00000299162 UQCRHLA0A096LP55 91 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 FAM177BA6PVY3 158 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 SGSM2O43147 1006 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 UQCRHP07919 91 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 ADCK5Q3MIX3 580 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 LMBR1LQ6UX01 489 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 ZCRB1Q8TBF4 217 aaKnown RBP12.15□□□□□ -0.47
FOXN4-201ENST00000299162 ZDHHC9Q9Y397 364 aa12.15□□□□□ -0.47
FOXN4-201ENST00000299162 TFCP2Q12800 502 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 STK3Q13188 491 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 NECAB1Q8N987 351 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 TMEM51Q9NW97 253 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 SLAIN2Q9P270 581 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 KDM6AO15550 1401 aaPredicted RBP12.14□□□□□ -0.47
FOXN4-201ENST00000299162 DDX46Q7L014 1031 aaKnown RBP12.14□□□□□ -0.47
FOXN4-201ENST00000299162 SNX14Q9Y5W7 946 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 NCOA3Q9Y6Q9 1424 aa12.14□□□□□ -0.47
FOXN4-201ENST00000299162 NMIQ13287 307 aaPredicted RBP12.13□□□□□ -0.47
FOXN4-201ENST00000299162 CCDC129Q6ZRS4 1044 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 CCDC83Q8IWF9 413 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 TSC1Q92574 1164 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 NSFL1CQ9UNZ2 370 aaKnown RBP12.13□□□□□ -0.47
FOXN4-201ENST00000299162 SPATA31A3Q5VYP0 1347 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 FOSBP53539 338 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 AK2P54819 239 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 ZFP91Q96JP5 570 aaPredicted RBP12.13□□□□□ -0.47
FOXN4-201ENST00000299162 METTL22Q9BUU2 404 aaPredicted RBP12.13□□□□□ -0.47
FOXN4-201ENST00000299162 MST1RQ04912 1400 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 RGPD5Q99666 1765 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 ZSCAN30Q86W11 494 aa12.13□□□□□ -0.47
FOXN4-201ENST00000299162 FAM208AQ9UK61 1670 aaKnown RBP12.13□□□□□ -0.47
FOXN4-201ENST00000299162 GPTP24298 496 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 TIMM10P62072 90 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 SEC62Q99442 399 aaKnown RBP12.12□□□□□ -0.47
FOXN4-201ENST00000299162 A0A0D9SFI3 127 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 LARGE1O95461 756 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 DBNDD2Q9BQY9 259 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 TAF6LQ9Y6J9 622 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 NBPF26B4DH59 902 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 NBPF14Q5TI25 921 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 NBPF10Q6P3W6 841 aaKnown RBP12.12□□□□□ -0.47
FOXN4-201ENST00000299162 NBPF15Q8N660 670 aa12.12□□□□□ -0.47
FOXN4-201ENST00000299162 LSG1Q9H089 658 aaKnown RBP12.12□□□□□ -0.47
FOXN4-201ENST00000299162 HSPA4P34932 840 aa12.11□□□□□ -0.47
FOXN4-201ENST00000299162 ERC1Q8IUD2 1116 aa12.11□□□□□ -0.47
FOXN4-201ENST00000299162 LRRC2Q9BYS8 371 aa12.11□□□□□ -0.47
FOXN4-201ENST00000299162 VPS37CA5D8V6 355 aaPredicted RBP12.11□□□□□ -0.47
FOXN4-201ENST00000299162 SNRKQ9NRH2 765 aa12.11□□□□□ -0.47
FOXN4-201ENST00000299162 RAD50Q92878 1312 aa12.11□□□□□ -0.47
FOXN4-201ENST00000299162 FERMT3Q86UX7 667 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 RUFY2Q8WXA3 655 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 RBM8AQ9Y5S9 174 aaKnown RBP12.1□□□□□ -0.47
FOXN4-201ENST00000299162 SYCE3A1L190 88 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.1□□□□□ -0.47
FOXN4-201ENST00000299162 SYNE4Q8N205 404 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 CWC22Q9HCG8 908 aaKnown RBP12.1□□□□□ -0.47
FOXN4-201ENST00000299162 ASAP1Q9ULH1 1129 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.1□□□□□ -0.47
FOXN4-201ENST00000299162 FIBPO43427 364 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 HSP90AB3PQ58FF7 597 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 ZNF589Q86UQ0 364 aaPredicted RBP12.1□□□□□ -0.47
FOXN4-201ENST00000299162 LMBRD1Q9NUN5 540 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 BTG4Q9NY30 223 aa12.1□□□□□ -0.47
FOXN4-201ENST00000299162 ADAMTS2O95450 1211 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 CCDC173Q0VFZ6 552 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 PDRG1Q9NUG6 133 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 DBNLQ9UJU6 430 aaKnown RBP12.09□□□□□ -0.47
FOXN4-201ENST00000299162 HDAC5Q9UQL6 1122 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 MED1Q15648 1581 aaPredicted RBP12.09□□□□□ -0.47
FOXN4-201ENST00000299162 IL2RBP14784 551 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 SKOR2Q2VWA4 1001 aaPredicted RBP12.09□□□□□ -0.47
FOXN4-201ENST00000299162 GPT2Q8TD30 523 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 EVI5LQ96CN4 794 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 FAM89AQ96GI7 184 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 SMC3Q9UQE7 1217 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 IGSF3O75054 1194 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 ZKSCAN1P17029 563 aaPredicted RBP12.09□□□□□ -0.47
FOXN4-201ENST00000299162 RUFY3Q7L099 469 aa12.09□□□□□ -0.47
FOXN4-201ENST00000299162 SMAP1Q8IYB5 467 aaPredicted RBP12.09□□□□□ -0.47
FOXN4-201ENST00000299162 LRRC37A3O60309 1634 aa12.08□□□□□ -0.47
FOXN4-201ENST00000299162 GOLIM4O00461 696 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 LRRC24Q50LG9 513 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 TNS3Q68CZ2 1445 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 ADAMTSL3P82987 1691 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 GADD45BO75293 160 aaPredicted RBP12.08□□□□□ -0.48
FOXN4-201ENST00000299162 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
FOXN4-201ENST00000299162 PTPN12Q05209 780 aaKnown RBP12.08□□□□□ -0.48
FOXN4-201ENST00000299162 GORABQ5T7V8 394 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 FAM173BQ6P4H8 233 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 PUS3Q9BZE2 481 aaKnown RBP12.08□□□□□ -0.48
FOXN4-201ENST00000299162 TMOD3Q9NYL9 352 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 TTC41PQ6P2S7 1318 aa12.08□□□□□ -0.48
FOXN4-201ENST00000299162 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
FOXN4-201ENST00000299162 ZSCAN23Q3MJ62 389 aa12.07□□□□□ -0.48
FOXN4-201ENST00000299162 DNAJC10Q8IXB1 793 aa12.07□□□□□ -0.48
FOXN4-201ENST00000299162 MTX1Q13505 466 aa12.07□□□□□ -0.48
FOXN4-201ENST00000299162 KLHL40Q2TBA0 621 aa12.07□□□□□ -0.48
FOXN4-201ENST00000299162 CYP46A1Q9Y6A2 500 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms