RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CASC1Q6TDU7 716 aa17.51■□□□□ 0.39
C9orf3-202ENST00000297979 NUTM1Q86Y26 1132 aa17.51■□□□□ 0.39
C9orf3-202ENST00000297979 CICQ96RK0 1608 aaPredicted RBP17.51■□□□□ 0.39
C9orf3-202ENST00000297979 HSPA1LP34931 641 aa17.5■□□□□ 0.39
C9orf3-202ENST00000297979 TCIRG1Q13488 830 aa17.5■□□□□ 0.39
C9orf3-202ENST00000297979 ISCA1Q9BUE6 129 aa17.5■□□□□ 0.39
C9orf3-202ENST00000297979 ZBTB1Q9Y2K1 713 aa17.5■□□□□ 0.39
C9orf3-202ENST00000297979 G3BP1Q13283 466 aaKnown RBP eCLIP17.5■□□□□ 0.39
C9orf3-202ENST00000297979 CLASRPQ8N2M8 674 aaKnown RBP17.5■□□□□ 0.39
C9orf3-202ENST00000297979 MAP3K15Q6ZN16 1313 aa17.5■□□□□ 0.39
C9orf3-202ENST00000297979 MEX3CQ5U5Q3 659 aaKnown RBP17.49■□□□□ 0.39
C9orf3-202ENST00000297979 THSD7AQ9UPZ6 1657 aa17.49■□□□□ 0.39
C9orf3-202ENST00000297979 RBM25P49756 843 aaKnown RBP17.49■□□□□ 0.39
C9orf3-202ENST00000297979 PALLDQ8WX93 1383 aa17.48■□□□□ 0.39
C9orf3-202ENST00000297979 LOC102724428A0A0B4J2F2 783 aa17.48■□□□□ 0.39
C9orf3-202ENST00000297979 IL6STP40189 918 aaPredicted RBP17.48■□□□□ 0.39
C9orf3-202ENST00000297979 SIK1P57059 783 aa17.48■□□□□ 0.39
C9orf3-202ENST00000297979 TRIM28Q13263 835 aaKnown RBP17.48■□□□□ 0.39
C9orf3-202ENST00000297979 SMARCC1Q92922 1105 aaPredicted RBP17.48■□□□□ 0.39
C9orf3-202ENST00000297979 COPRSQ9NQ92 184 aa17.48■□□□□ 0.39
C9orf3-202ENST00000297979 USP42Q9H9J4 1324 aaKnown RBP17.47■□□□□ 0.39
C9orf3-202ENST00000297979 ATP6V1AP38606 617 aa17.47■□□□□ 0.39
C9orf3-202ENST00000297979 RFX5P48382 616 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-202ENST00000297979 FOXO4P98177 505 aa17.47■□□□□ 0.39
C9orf3-202ENST00000297979 BECN1Q14457 450 aa17.47■□□□□ 0.39
C9orf3-202ENST00000297979 GIGYF2Q6Y7W6 1299 aaKnown RBP17.47■□□□□ 0.39
C9orf3-202ENST00000297979 SIL1Q9H173 461 aa17.47■□□□□ 0.39
C9orf3-202ENST00000297979 RREB1Q92766 1687 aa17.47■□□□□ 0.39
C9orf3-202ENST00000297979 ANKRD36CQ5JPF3 1778 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 SASH1O94885 1247 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 KLHDC4Q8TBB5 520 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 TTC41PQ6P2S7 1318 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 KCNQ2O43526 872 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 SLC4A3P48751 1232 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 HSP90AB3PQ58FF7 597 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 LMBR1LQ6UX01 489 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 PI4K2BQ8TCG2 481 aa17.46■□□□□ 0.39
C9orf3-202ENST00000297979 TRIM6-TRIM34B2RNG4 842 aa17.45■□□□□ 0.38
C9orf3-202ENST00000297979 RTL5Q5HYW3 569 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-202ENST00000297979 IFIT2P09913 472 aaKnown RBP17.45■□□□□ 0.38
C9orf3-202ENST00000297979 PTPN12Q05209 780 aaKnown RBP17.45■□□□□ 0.38
C9orf3-202ENST00000297979 CCDC87Q9NVE4 849 aa17.45■□□□□ 0.38
C9orf3-202ENST00000297979 ZNF831Q5JPB2 1677 aa17.45■□□□□ 0.38
C9orf3-202ENST00000297979 AACSQ86V21 672 aa17.44■□□□□ 0.38
C9orf3-202ENST00000297979 RILPL2Q969X0 211 aa17.44■□□□□ 0.38
C9orf3-202ENST00000297979 GPATCH3Q96I76 525 aa17.44■□□□□ 0.38
C9orf3-202ENST00000297979 HLFQ16534 295 aa17.44■□□□□ 0.38
C9orf3-202ENST00000297979 AFF2P51816 1311 aa17.44■□□□□ 0.38
C9orf3-202ENST00000297979 ERVV-1B6SEH8 477 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 CRKLP46109 303 aaKnown RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 INTS5Q6P9B9 1019 aaKnown RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 DZIP3Q86Y13 1208 aaKnown RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 AK9Q5TCS8 1911 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 NUP98P52948 1817 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 PCCAP05165 728 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 ITPK1Q13572 414 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 CHMP3Q9Y3E7 222 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 COL5A3P25940 1745 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 ERC2O15083 957 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 GLRX3O76003 335 aaKnown RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 EIF5P55010 431 aaKnown RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 GJD4Q96KN9 370 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-202ENST00000297979 ECHDC1Q9NTX5 307 aa17.43■□□□□ 0.38
C9orf3-202ENST00000297979 REC8O95072 547 aa17.42■□□□□ 0.38
C9orf3-202ENST00000297979 ZBTB38Q8NAP3 1195 aaPredicted RBP17.42■□□□□ 0.38
C9orf3-202ENST00000297979 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
C9orf3-202ENST00000297979 EAF2Q96CJ1 260 aaPredicted RBP17.42■□□□□ 0.38
C9orf3-202ENST00000297979 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.42■□□□□ 0.38
C9orf3-202ENST00000297979 NHSQ6T4R5 1651 aa17.41■□□□□ 0.38
C9orf3-202ENST00000297979 ATRNO75882 1429 aa17.41■□□□□ 0.38
C9orf3-202ENST00000297979 NLRP10Q86W26 655 aa17.41■□□□□ 0.38
C9orf3-202ENST00000297979 FBXO3Q9UK99 471 aa17.41■□□□□ 0.38
C9orf3-202ENST00000297979 TBC1D2BQ9UPU7 963 aa17.41■□□□□ 0.38
C9orf3-202ENST00000297979 GPTP24298 496 aa17.4■□□□□ 0.38
C9orf3-202ENST00000297979 CHMLP26374 656 aa17.4■□□□□ 0.38
C9orf3-202ENST00000297979 CNTROBQ8N137 903 aa17.4■□□□□ 0.38
C9orf3-202ENST00000297979 PLA2G12BQ9BX93 195 aa17.4■□□□□ 0.38
C9orf3-202ENST00000297979 USP26Q9BXU7 913 aa17.4■□□□□ 0.38
C9orf3-202ENST00000297979 MYH14Q7Z406 1995 aaKnown RBP17.4■□□□□ 0.38
C9orf3-202ENST00000297979 FAM89AQ96GI7 184 aa17.39■□□□□ 0.38
C9orf3-202ENST00000297979 TBC1D2Q9BYX2 928 aa17.39■□□□□ 0.38
C9orf3-202ENST00000297979 CDHR2Q9BYE9 1310 aa17.39■□□□□ 0.37
C9orf3-202ENST00000297979 ESYT1Q9BSJ8 1104 aa17.39■□□□□ 0.37
C9orf3-202ENST00000297979 TRPC5Q9UL62 973 aaPredicted RBP17.39■□□□□ 0.37
C9orf3-202ENST00000297979 BTAF1O14981 1849 aa17.39■□□□□ 0.37
C9orf3-202ENST00000297979 MAP4K4O95819 1239 aaPredicted RBP17.39■□□□□ 0.37
C9orf3-202ENST00000297979 KIF2CQ99661 725 aa17.39■□□□□ 0.37
C9orf3-202ENST00000297979 CCDC8Q9H0W5 538 aaPredicted RBP17.39■□□□□ 0.37
C9orf3-202ENST00000297979 TFCP2Q12800 502 aa17.38■□□□□ 0.37
C9orf3-202ENST00000297979 TLR7Q9NYK1 1049 aaKnown RBP17.38■□□□□ 0.37
C9orf3-202ENST00000297979 TNNI3KQ59H18 835 aa17.37■□□□□ 0.37
C9orf3-202ENST00000297979 FPGT-TNNI3KV9GXZ4 949 aa17.37■□□□□ 0.37
C9orf3-202ENST00000297979 ZNF34Q8IZ26 560 aa17.37■□□□□ 0.37
C9orf3-202ENST00000297979 UBN2Q6ZU65 1347 aa17.36■□□□□ 0.37
C9orf3-202ENST00000297979 ONECUT3O60422 494 aaPredicted RBP17.36■□□□□ 0.37
C9orf3-202ENST00000297979 IL15P40933 162 aaPredicted RBP17.35■□□□□ 0.37
C9orf3-202ENST00000297979 CCDC57Q2TAC2 916 aa17.35■□□□□ 0.37
C9orf3-202ENST00000297979 PTF1AQ7RTS3 328 aa17.35■□□□□ 0.37
C9orf3-202ENST00000297979 ATG9AQ7Z3C6 839 aa17.35■□□□□ 0.37
C9orf3-202ENST00000297979 LINC00116Q8NCU8 138 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms