RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TOGARAM1Q9Y4F4 1720 aa28.97■■■□□ 2.23
TRIM54-201ENST00000296098 RFX5P48382 616 aaPredicted RBP28.96■■■□□ 2.23
TRIM54-201ENST00000296098 ARXQ96QS3 562 aa28.96■■■□□ 2.23
TRIM54-201ENST00000296098 ISY1Q9ULR0 285 aaKnown RBP28.96■■■□□ 2.23
TRIM54-201ENST00000296098 ZDHHC9Q9Y397 364 aa28.96■■■□□ 2.23
TRIM54-201ENST00000296098 HIP1O00291 1037 aa28.96■■■□□ 2.23
TRIM54-201ENST00000296098 MCTP1Q6DN14 999 aa28.96■■■□□ 2.23
TRIM54-201ENST00000296098 DDX54Q8TDD1 881 aaKnown RBP28.96■■■□□ 2.23
TRIM54-201ENST00000296098 TJP1Q07157 1748 aa28.95■■■□□ 2.23
TRIM54-201ENST00000296098 EVA1CP58658 441 aa28.95■■■□□ 2.23
TRIM54-201ENST00000296098 CASP7P55210 303 aa28.94■■■□□ 2.22
TRIM54-201ENST00000296098 PTPN12Q05209 780 aaKnown RBP28.93■■■□□ 2.22
TRIM54-201ENST00000296098 KLHL40Q2TBA0 621 aa28.93■■■□□ 2.22
TRIM54-201ENST00000296098 RASEFQ8IZ41 740 aa28.93■■■□□ 2.22
TRIM54-201ENST00000296098 XRCC6P12956 609 aaKnown RBP eCLIP28.92■■■□□ 2.22
TRIM54-201ENST00000296098 DDX49Q9Y6V7 483 aaKnown RBP28.91■■■□□ 2.22
TRIM54-201ENST00000296098 MRE11P49959 708 aa28.91■■■□□ 2.22
TRIM54-201ENST00000296098 PTH1RQ03431 593 aa28.91■■■□□ 2.22
TRIM54-201ENST00000296098 TTLL7Q6ZT98 887 aa28.91■■■□□ 2.22
TRIM54-201ENST00000296098 TTC14Q96N46 770 aa28.91■■■□□ 2.22
TRIM54-201ENST00000296098 BOLA2Q9H3K6 86 aa28.91■■■□□ 2.22
TRIM54-201ENST00000296098 CCDC171Q6TFL3 1326 aa28.9■■■□□ 2.22
TRIM54-201ENST00000296098 A1BGP04217 495 aa28.89■■■□□ 2.22
TRIM54-201ENST00000296098 NMIQ13287 307 aaPredicted RBP28.89■■■□□ 2.22
TRIM54-201ENST00000296098 FSD1Q9BTV5 496 aa28.89■■■□□ 2.22
TRIM54-201ENST00000296098 TNNI3KQ59H18 835 aa28.89■■■□□ 2.21
TRIM54-201ENST00000296098 CWC25Q9NXE8 425 aaPredicted RBP28.89■■■□□ 2.21
TRIM54-201ENST00000296098 FPGT-TNNI3KV9GXZ4 949 aa28.89■■■□□ 2.21
TRIM54-201ENST00000296098 H7C1W4 665 aa28.88■■■□□ 2.21
TRIM54-201ENST00000296098 TFCP2Q12800 502 aa28.88■■■□□ 2.21
TRIM54-201ENST00000296098 LMBRD1Q9NUN5 540 aa28.88■■■□□ 2.21
TRIM54-201ENST00000296098 BRD1O95696 1058 aa28.87■■■□□ 2.21
TRIM54-201ENST00000296098 FAM227BQ96M60 508 aa28.87■■■□□ 2.21
TRIM54-201ENST00000296098 KCNB2Q92953 911 aa28.87■■■□□ 2.21
TRIM54-201ENST00000296098 SNRKQ9NRH2 765 aa28.87■■■□□ 2.21
TRIM54-201ENST00000296098 PRPF40BQ6NWY9 871 aaKnown RBP28.86■■■□□ 2.21
TRIM54-201ENST00000296098 LMBR1LQ6UX01 489 aa28.86■■■□□ 2.21
TRIM54-201ENST00000296098 GRPEL1Q9HAV7 217 aa28.86■■■□□ 2.21
TRIM54-201ENST00000296098 TMOD3Q9NYL9 352 aa28.86■■■□□ 2.21
TRIM54-201ENST00000296098 DBNLQ9UJU6 430 aaKnown RBP28.86■■■□□ 2.21
TRIM54-201ENST00000296098 CASTP20810 708 aaKnown RBP28.86■■■□□ 2.21
TRIM54-201ENST00000296098 AK2P54819 239 aa28.86■■■□□ 2.21
TRIM54-201ENST00000296098 FOXO4P98177 505 aa28.86■■■□□ 2.21
TRIM54-201ENST00000296098 ATP5JP18859 108 aa28.85■■■□□ 2.21
TRIM54-201ENST00000296098 ZBTB3Q9H5J0 574 aa28.84■■■□□ 2.21
TRIM54-201ENST00000296098 TM6SF1Q9BZW5 370 aa28.84■■■□□ 2.21
TRIM54-201ENST00000296098 MED23Q9ULK4 1368 aa28.84■■■□□ 2.21
TRIM54-201ENST00000296098 A0A0D9SFI3 127 aa28.83■■■□□ 2.21
TRIM54-201ENST00000296098 NECTIN1Q15223 517 aa28.83■■■□□ 2.21
TRIM54-201ENST00000296098 CCDC191Q8NCU4 936 aa28.83■■■□□ 2.21
TRIM54-201ENST00000296098 LIMCH1Q9UPQ0 1083 aa28.83■■■□□ 2.21
TRIM54-201ENST00000296098 RBM8AQ9Y5S9 174 aaKnown RBP28.83■■■□□ 2.21
TRIM54-201ENST00000296098 FOXD4L5Q5VV16 416 aaPredicted RBP28.82■■■□□ 2.2
TRIM54-201ENST00000296098 FOXD4L4Q8WXT5 416 aaPredicted RBP28.82■■■□□ 2.2
TRIM54-201ENST00000296098 JAKMIP1Q96N16 626 aaKnown RBP28.82■■■□□ 2.2
TRIM54-201ENST00000296098 CHMP3Q9Y3E7 222 aa28.82■■■□□ 2.2
TRIM54-201ENST00000296098 COL14A1Q05707 1796 aaKnown RBP28.82■■■□□ 2.2
TRIM54-201ENST00000296098 RUFY3Q7L099 469 aa28.82■■■□□ 2.2
TRIM54-201ENST00000296098 MAP4K1Q92918 833 aa28.82■■■□□ 2.2
TRIM54-201ENST00000296098 RFX7Q2KHR2 1363 aa28.81■■■□□ 2.2
TRIM54-201ENST00000296098 ZKSCAN1P17029 563 aaPredicted RBP28.81■■■□□ 2.2
TRIM54-201ENST00000296098 KCNJ4P48050 445 aa28.81■■■□□ 2.2
TRIM54-201ENST00000296098 PANK2Q9BZ23 570 aa28.81■■■□□ 2.2
TRIM54-201ENST00000296098 PRPF40AO75400 957 aaKnown RBP28.8■■■□□ 2.2
TRIM54-201ENST00000296098 VPS53Q5VIR6 699 aa28.8■■■□□ 2.2
TRIM54-201ENST00000296098 CREB3L3Q68CJ9 461 aa28.8■■■□□ 2.2
TRIM54-201ENST00000296098 GAS2L3Q86XJ1 694 aa28.8■■■□□ 2.2
TRIM54-201ENST00000296098 ZSWIM6Q9HCJ5 1215 aa28.8■■■□□ 2.2
TRIM54-201ENST00000296098 RTN4Q9NQC3 1192 aaKnown RBP28.8■■■□□ 2.2
TRIM54-201ENST00000296098 BTG4Q9NY30 223 aa28.8■■■□□ 2.2
TRIM54-201ENST00000296098 JCADQ9P266 1359 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 CPA1P15085 419 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 ADCK5Q3MIX3 580 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 CYP46A1Q9Y6A2 500 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 DBNDD2Q9BQY9 259 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 PDRG1Q9NUG6 133 aa28.79■■■□□ 2.2
TRIM54-201ENST00000296098 ITGB4P16144 1822 aa28.78■■■□□ 2.2
TRIM54-201ENST00000296098 WDR33Q9C0J8 1336 aaKnown RBP28.78■■■□□ 2.2
TRIM54-201ENST00000296098 PLCH1Q4KWH8 1693 aa28.78■■■□□ 2.2
TRIM54-201ENST00000296098 EDC3Q96F86 508 aaKnown RBP28.77■■■□□ 2.2
TRIM54-201ENST00000296098 RPAP1Q9BWH6 1393 aaPredicted RBP28.77■■■□□ 2.2
TRIM54-201ENST00000296098 NCLP19338 710 aaKnown RBP28.77■■■□□ 2.2
TRIM54-201ENST00000296098 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.77■■■□□ 2.2
TRIM54-201ENST00000296098 DISP2A7MBM2 1401 aa28.76■■■□□ 2.2
TRIM54-201ENST00000296098 CHAMP1Q96JM3 812 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 SLC27A2O14975 620 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 RNF20Q5VTR2 975 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 CAVIN1Q6NZI2 390 aaKnown RBP28.76■■■□□ 2.19
TRIM54-201ENST00000296098 ATG9AQ7Z3C6 839 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 VSIG10Q8N0Z9 540 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 HAUS7Q99871 368 aa28.76■■■□□ 2.19
TRIM54-201ENST00000296098 TEX13AQ9BXU3 409 aaPredicted RBP28.76■■■□□ 2.19
TRIM54-201ENST00000296098 PIGBQ92521 554 aa28.75■■■□□ 2.19
TRIM54-201ENST00000296098 ZNF589Q86UQ0 364 aaPredicted RBP28.74■■■□□ 2.19
TRIM54-201ENST00000296098 DNAJC2Q99543 621 aaKnown RBP28.74■■■□□ 2.19
TRIM54-201ENST00000296098 ISCA1Q9BUE6 129 aa28.74■■■□□ 2.19
TRIM54-201ENST00000296098 GPR108Q9NPR9 543 aa28.74■■■□□ 2.19
TRIM54-201ENST00000296098 ASAP1Q9ULH1 1129 aa28.74■■■□□ 2.19
TRIM54-201ENST00000296098 LRP6O75581 1613 aa28.74■■■□□ 2.19
TRIM54-201ENST00000296098 IL15P40933 162 aaPredicted RBP28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms