RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 EIF4A2Q14240 407 aaKnown RBP9.17□□□□□ -0.94
USP3-201ENST00000268049 ARMC9Q7Z3E5 817 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 THUMPD2Q9BTF0 503 aaKnown RBP9.17□□□□□ -0.94
USP3-201ENST00000268049 MAP3K4Q9Y6R4 1608 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 CCDC178Q5BJE1 867 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 EXOC6Q8TAG9 804 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 BMP2KQ9NSY1 1161 aaPredicted RBP9.17□□□□□ -0.94
USP3-201ENST00000268049 CLTCQ00610 1675 aaKnown RBP9.17□□□□□ -0.94
USP3-201ENST00000268049 CALCOCO1Q9P1Z2 691 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 KIF1BO60333 1816 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 TAF12Q16514 161 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 DHX37Q8IY37 1157 aaKnown RBP9.16□□□□□ -0.94
USP3-201ENST00000268049 SPATA31A6Q5VVP1 1343 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 HOXD10P28358 340 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 BRINP3Q76B58 766 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 AKAP4Q5JQC9 854 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 SPATA31E1Q6ZUB1 1445 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 JCADQ9P266 1359 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 NEFHP12036 1026 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 RRP1P56182 461 aaKnown RBP9.16□□□□□ -0.94
USP3-201ENST00000268049 FOXD4L6Q3SYB3 417 aaPredicted RBP9.16□□□□□ -0.94
USP3-201ENST00000268049 DUSP27Q5VZP5 1158 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 FOXD4L3Q6VB84 417 aaPredicted RBP9.16□□□□□ -0.94
USP3-201ENST00000268049 GPATCH11Q8N954 259 aa9.16□□□□□ -0.94
USP3-201ENST00000268049 ZFYVE27Q5T4F4 411 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 NUCB2P80303 420 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 CCDC117Q8IWD4 279 aaPredicted RBP9.15□□□□□ -0.94
USP3-201ENST00000268049 RIMS1Q86UR5 1692 aaKnown RBP9.15□□□□□ -0.94
USP3-201ENST00000268049 IQCA1LA6NCM1 817 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 SURF6O75683 361 aaKnown RBP9.15□□□□□ -0.94
USP3-201ENST00000268049 KIAA0754O94854 1291 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 EP400NLQ6ZTU2 488 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 UNC5CLQ8IV45 518 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 PDCL2Q8N4E4 241 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 DYDC1Q8WWB3 177 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 MYOM2P54296 1465 aa9.15□□□□□ -0.94
USP3-201ENST00000268049 ABCA6Q8N139 1617 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 AFF2P51816 1311 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 GNAI2P04899 355 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 DALRD3Q5D0E6 543 aaKnown RBP9.15□□□□□ -0.95
USP3-201ENST00000268049 DCAF15Q66K64 600 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 CCDC150Q8NCX0 1101 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 CWC25Q9NXE8 425 aaPredicted RBP9.15□□□□□ -0.95
USP3-201ENST00000268049 FAM135BQ49AJ0 1406 aa9.15□□□□□ -0.95
USP3-201ENST00000268049 ASXL1Q8IXJ9 1541 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 FAM83GA6ND36 823 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 PARP10Q53GL7 1025 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 ANKRD45Q5TZF3 282 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 USP48Q86UV5 1035 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 DZIP3Q86Y13 1208 aaKnown RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 C2orf69Q8N8R5 385 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 SMCR8Q8TEV9 937 aaPredicted RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 EYA1Q99502 592 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 NOL7Q9UMY1 257 aaKnown RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 PPP1R12BO60237 982 aaPredicted RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 CT47B1P0C2W7 299 aaPredicted RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 DPP8Q6V1X1 898 aaPredicted RBP9.14□□□□□ -0.95
USP3-201ENST00000268049 CARD14Q9BXL6 1004 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 AS3MTQ9HBK9 375 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 IQGAP3Q86VI3 1631 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 GPTP24298 496 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 CBX1P83916 185 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 GRPEL1Q9HAV7 217 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 DCAF5Q96JK2 942 aa9.14□□□□□ -0.95
USP3-201ENST00000268049 TTF1Q15361 905 aaPredicted RBP9.13□□□□□ -0.95
USP3-201ENST00000268049 SBNO1A3KN83 1393 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 INO80Q9ULG1 1556 aaPredicted RBP9.13□□□□□ -0.95
USP3-201ENST00000268049 ZFYVE9O95405 1425 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 ADGRB3O60242 1522 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 POTEJP0CG39 1038 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 PLS1Q14651 629 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 MVPQ14764 893 aaKnown RBP9.13□□□□□ -0.95
USP3-201ENST00000268049 C2CD5Q86YS7 1000 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 SEPT12Q8IYM1 358 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 RNF214Q8ND24 703 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 CDCA7LQ96GN5 454 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 KAT6BQ8WYB5 2073 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 IDH1O75874 414 aaKnown RBP9.13□□□□□ -0.95
USP3-201ENST00000268049 FKBP4Q02790 459 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP3-201ENST00000268049 ZNF428Q96B54 188 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 MYD88Q99836 296 aa9.13□□□□□ -0.95
USP3-201ENST00000268049 RNF41Q9H4P4 317 aaPredicted RBP9.13□□□□□ -0.95
USP3-201ENST00000268049 UQCRFS1P1P0C7P4 283 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 ATF5Q9Y2D1 282 aaPredicted RBP9.12□□□□□ -0.95
USP3-201ENST00000268049 PPIP5K2O43314 1243 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 OFD1O75665 1012 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 TRIM37O94972 964 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 MTIF3Q9H2K0 278 aaKnown RBP9.12□□□□□ -0.95
USP3-201ENST00000268049 ZMYM4Q5VZL5 1548 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 CCDC112Q8NEF3 446 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 CRNKL1Q9BZJ0 848 aaKnown RBP9.12□□□□□ -0.95
USP3-201ENST00000268049 DBF4Q9UBU7 674 aaPredicted RBP9.12□□□□□ -0.95
USP3-201ENST00000268049 M0QZ92 97 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 ZEB2O60315 1214 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 CDKL5O76039 1030 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 TSPYL2Q9H2G4 693 aaPredicted RBP9.12□□□□□ -0.95
USP3-201ENST00000268049 AAMPQ13685 434 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 CC2D2BQ6DHV5 1058 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 CAMSAP1Q5T5Y3 1602 aa9.12□□□□□ -0.95
USP3-201ENST00000268049 RNF17Q9BXT8 1623 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 328.4 ms