RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RAB11FIP3O75154 756 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 FOXO4P98177 505 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 CCDC191Q8NCU4 936 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 CCDC87Q9NVE4 849 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 NOP58Q9Y2X3 529 aaKnown RBP20.29■□□□□ 0.84
USP4-201ENST00000265560 CDC45O75419 566 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 TBC1D32Q96NH3 1257 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 HDAC5Q9UQL6 1122 aa20.29■□□□□ 0.84
USP4-201ENST00000265560 ERICH6Q7L0X2 663 aa20.28■□□□□ 0.84
USP4-201ENST00000265560 AACSQ86V21 672 aa20.28■□□□□ 0.84
USP4-201ENST00000265560 ISCA1Q9BUE6 129 aa20.28■□□□□ 0.84
USP4-201ENST00000265560 TLR7Q9NYK1 1049 aaKnown RBP20.28■□□□□ 0.84
USP4-201ENST00000265560 PTPN12Q05209 780 aaKnown RBP20.28■□□□□ 0.84
USP4-201ENST00000265560 GIGYF2Q6Y7W6 1299 aaKnown RBP20.28■□□□□ 0.84
USP4-201ENST00000265560 EAF2Q96CJ1 260 aaPredicted RBP20.27■□□□□ 0.84
USP4-201ENST00000265560 CLASRPQ8N2M8 674 aaKnown RBP20.27■□□□□ 0.84
USP4-201ENST00000265560 LINC00116Q8NCU8 138 aa20.27■□□□□ 0.84
USP4-201ENST00000265560 NUP188Q5SRE5 1749 aa20.27■□□□□ 0.84
USP4-201ENST00000265560 TRPC5Q9UL62 973 aaPredicted RBP20.26■□□□□ 0.83
USP4-201ENST00000265560 RFX5P48382 616 aaPredicted RBP20.26■□□□□ 0.83
USP4-201ENST00000265560 IL6STP40189 918 aaPredicted RBP20.25■□□□□ 0.83
USP4-201ENST00000265560 EIF5P55010 431 aaKnown RBP20.25■□□□□ 0.83
USP4-201ENST00000265560 TJP1Q07157 1748 aa20.25■□□□□ 0.83
USP4-201ENST00000265560 HSP90AB4PQ58FF6 505 aa20.25■□□□□ 0.83
USP4-201ENST00000265560 IFIT2P09913 472 aaKnown RBP20.25■□□□□ 0.83
USP4-201ENST00000265560 TFCP2Q12800 502 aa20.25■□□□□ 0.83
USP4-201ENST00000265560 NLRP10Q86W26 655 aa20.25■□□□□ 0.83
USP4-201ENST00000265560 OSBPL3Q9H4L5 887 aa20.25■□□□□ 0.83
USP4-201ENST00000265560 TRMT112Q9UI30 125 aaKnown RBP20.25■□□□□ 0.83
USP4-201ENST00000265560 PUS3Q9BZE2 481 aaKnown RBP20.24■□□□□ 0.83
USP4-201ENST00000265560 RABL6Q3YEC7 729 aaPredicted RBP20.24■□□□□ 0.83
USP4-201ENST00000265560 LRRC24Q50LG9 513 aa20.23■□□□□ 0.83
USP4-201ENST00000265560 PI4K2BQ8TCG2 481 aa20.23■□□□□ 0.83
USP4-201ENST00000265560 NDUFB9Q9Y6M9 179 aa20.23■□□□□ 0.83
USP4-201ENST00000265560 UBN2Q6ZU65 1347 aa20.23■□□□□ 0.83
USP4-201ENST00000265560 SPRYD3Q8NCJ5 442 aa20.22■□□□□ 0.83
USP4-201ENST00000265560 SMARCC1Q92922 1105 aaPredicted RBP20.22■□□□□ 0.83
USP4-201ENST00000265560 BICDL1Q6ZP65 573 aa20.22■□□□□ 0.83
USP4-201ENST00000265560 DAXXQ9UER7 740 aaPredicted RBP20.22■□□□□ 0.83
USP4-201ENST00000265560 STAP2Q9UGK3 403 aa20.22■□□□□ 0.83
USP4-201ENST00000265560 AMIGO3Q86WK7 504 aa20.21■□□□□ 0.83
USP4-201ENST00000265560 HCLS1P14317 486 aaPredicted RBP20.21■□□□□ 0.83
USP4-201ENST00000265560 COPRSQ9NQ92 184 aa20.21■□□□□ 0.83
USP4-201ENST00000265560 ERC1Q8IUD2 1116 aa20.2■□□□□ 0.82
USP4-201ENST00000265560 ZBTB38Q8NAP3 1195 aaPredicted RBP20.2■□□□□ 0.82
USP4-201ENST00000265560 IL25Q9H293 177 aa20.2■□□□□ 0.82
USP4-201ENST00000265560 DDRGK1Q96HY6 314 aa20.2■□□□□ 0.82
USP4-201ENST00000265560 CCNL1Q9UK58 526 aaPredicted RBP20.2■□□□□ 0.82
USP4-201ENST00000265560 NUP98P52948 1817 aa20.2■□□□□ 0.82
USP4-201ENST00000265560 BOLA2Q9H3K6 86 aa20.19■□□□□ 0.82
USP4-201ENST00000265560 TIMM10P62072 90 aa20.19■□□□□ 0.82
USP4-201ENST00000265560 SUSD4Q5VX71 490 aa20.19■□□□□ 0.82
USP4-201ENST00000265560 EDC3Q96F86 508 aaKnown RBP20.19■□□□□ 0.82
USP4-201ENST00000265560 IRS4O14654 1257 aaPredicted RBP20.18■□□□□ 0.82
USP4-201ENST00000265560 NEUROD6Q96NK8 337 aa20.18■□□□□ 0.82
USP4-201ENST00000265560 CAMTA2O94983 1202 aa20.18■□□□□ 0.82
USP4-201ENST00000265560 PCCAP05165 728 aaPredicted RBP20.18■□□□□ 0.82
USP4-201ENST00000265560 NIP7Q9Y221 180 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP4-201ENST00000265560 PHF14O94880 888 aa20.18■□□□□ 0.82
USP4-201ENST00000265560 TRIM28Q13263 835 aaKnown RBP20.18■□□□□ 0.82
USP4-201ENST00000265560 CCDC57Q2TAC2 916 aa20.18■□□□□ 0.82
USP4-201ENST00000265560 GREM2Q9H772 168 aa20.18■□□□□ 0.82
USP4-201ENST00000265560 CCDC24Q8N4L8 307 aa20.17■□□□□ 0.82
USP4-201ENST00000265560 ECHDC1Q9NTX5 307 aa20.17■□□□□ 0.82
USP4-201ENST00000265560 SRP68Q9UHB9 627 aaKnown RBP20.17■□□□□ 0.82
USP4-201ENST00000265560 GNPATO15228 680 aa20.17■□□□□ 0.82
USP4-201ENST00000265560 TRIM37O94972 964 aa20.17■□□□□ 0.82
USP4-201ENST00000265560 ATG9AQ7Z3C6 839 aa20.17■□□□□ 0.82
USP4-201ENST00000265560 DBNDD2Q9BQY9 259 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 DBNLQ9UJU6 430 aaKnown RBP20.16■□□□□ 0.82
USP4-201ENST00000265560 ATRNO75882 1429 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 TAF7LQ5H9L4 462 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 COL15A1P39059 1388 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 BTAF1O14981 1849 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 CHMLP26374 656 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 HSP90AB3PQ58FF7 597 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 CASC1Q6TDU7 716 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 ZNF34Q8IZ26 560 aa20.16■□□□□ 0.82
USP4-201ENST00000265560 ERVV-1B6SEH8 477 aa20.15■□□□□ 0.82
USP4-201ENST00000265560 TNNI3KQ59H18 835 aa20.15■□□□□ 0.82
USP4-201ENST00000265560 FPGT-TNNI3KV9GXZ4 949 aa20.15■□□□□ 0.82
USP4-201ENST00000265560 ONECUT3O60422 494 aaPredicted RBP20.15■□□□□ 0.82
USP4-201ENST00000265560 THSD7AQ9UPZ6 1657 aa20.15■□□□□ 0.82
USP4-201ENST00000265560 TTLL11Q8NHH1 800 aa20.14■□□□□ 0.82
USP4-201ENST00000265560 CWC27Q6UX04 472 aaKnown RBP20.14■□□□□ 0.81
USP4-201ENST00000265560 CHGBP05060 677 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 ITGA6P23229 1130 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 USP26Q9BXU7 913 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 TBC1D2Q9BYX2 928 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 LRRC4BQ9NT99 713 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 GLRX3O76003 335 aaKnown RBP20.13■□□□□ 0.81
USP4-201ENST00000265560 IFIT5Q13325 482 aaKnown RBP20.13■□□□□ 0.81
USP4-201ENST00000265560 KIF2CQ99661 725 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 ANO2Q9NQ90 1003 aa20.13■□□□□ 0.81
USP4-201ENST00000265560 SLKQ9H2G2 1235 aaPredicted RBP20.13■□□□□ 0.81
USP4-201ENST00000265560 EYA2O00167 538 aa20.12■□□□□ 0.81
USP4-201ENST00000265560 ERC2O15083 957 aa20.12■□□□□ 0.81
USP4-201ENST00000265560 USPL1Q5W0Q7 1092 aa20.12■□□□□ 0.81
USP4-201ENST00000265560 KRT27Q7Z3Y8 459 aa20.12■□□□□ 0.81
USP4-201ENST00000265560 ESYT1Q9BSJ8 1104 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms