RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 TYRO3Q06418 890 aa14.21□□□□□ -0.14
USHBP1-201ENST00000252597 ZRSR1Q15695 479 aaKnown RBP14.21□□□□□ -0.14
USHBP1-201ENST00000252597 ECHDC1Q9NTX5 307 aa14.21□□□□□ -0.14
USHBP1-201ENST00000252597 CCT2P78371 535 aaKnown RBP14.2□□□□□ -0.14
USHBP1-201ENST00000252597 CHST3Q7LGC8 479 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 TNNT1P13805 278 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 GORABQ5T7V8 394 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 ISM2Q6H9L7 571 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 CCDC129Q6ZRS4 1044 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 PI4K2BQ8TCG2 481 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 HYPKQ9NX55 129 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 TLR7Q9NYK1 1049 aaKnown RBP14.2□□□□□ -0.14
USHBP1-201ENST00000252597 MAP2P11137 1827 aaKnown RBP14.2□□□□□ -0.14
USHBP1-201ENST00000252597 ZNF165P49910 485 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 RIC3Q7Z5B4 369 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 MTERF4Q7Z6M4 381 aaKnown RBP14.2□□□□□ -0.14
USHBP1-201ENST00000252597 NEUROD6Q96NK8 337 aa14.2□□□□□ -0.14
USHBP1-201ENST00000252597 LETM1O95202 739 aaPredicted RBP14.19□□□□□ -0.14
USHBP1-201ENST00000252597 PROSER3Q2NL68 480 aa14.19□□□□□ -0.14
USHBP1-201ENST00000252597 ZNF710Q8N1W2 664 aa14.19□□□□□ -0.14
USHBP1-201ENST00000252597 RPAP1Q9BWH6 1393 aaPredicted RBP14.19□□□□□ -0.14
USHBP1-201ENST00000252597 ARID5BQ14865 1188 aa14.19□□□□□ -0.14
USHBP1-201ENST00000252597 CREB3L3Q68CJ9 461 aa14.19□□□□□ -0.14
USHBP1-201ENST00000252597 FTOQ9C0B1 505 aaKnown RBP eCLIP14.19□□□□□ -0.14
USHBP1-201ENST00000252597 KIAA0232Q92628 1395 aa14.19□□□□□ -0.14
USHBP1-201ENST00000252597 SLC39A6Q13433 755 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 KIF20BQ96Q89 1820 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 SSH3Q8TE77 659 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 KCNF1Q9H3M0 494 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 CLIP2Q9UDT6 1046 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.18□□□□□ -0.14
USHBP1-201ENST00000252597 UVSSAQ2YD98 709 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 SLFNL1Q499Z3 407 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 ANKLE2Q86XL3 938 aa14.18□□□□□ -0.14
USHBP1-201ENST00000252597 TERF1P54274 439 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 PRIMPOLQ96LW4 560 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 CBX8Q9HC52 389 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 KIF24Q5T7B8 1368 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 A0A0D9SFI3 127 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 BIN1O00499 593 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 NR1I2O75469 434 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 HSP90AB4PQ58FF6 505 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 C1orf141Q5JVX7 400 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 FAM200AQ8TCP9 573 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 SEC62Q99442 399 aaKnown RBP14.17□□□□□ -0.14
USHBP1-201ENST00000252597 STAP2Q9UGK3 403 aa14.17□□□□□ -0.14
USHBP1-201ENST00000252597 CDK12Q9NYV4 1490 aaPredicted RBP14.16□□□□□ -0.14
USHBP1-201ENST00000252597 RIMS1Q86UR5 1692 aaKnown RBP14.16□□□□□ -0.14
USHBP1-201ENST00000252597 DDX46Q7L014 1031 aaKnown RBP14.16□□□□□ -0.14
USHBP1-201ENST00000252597 CCDC112Q8NEF3 446 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 CCDC85AQ96PX6 553 aaPredicted RBP14.16□□□□□ -0.14
USHBP1-201ENST00000252597 ERICH4A6NGS2 130 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 SF3A1Q15459 793 aaKnown RBP14.16□□□□□ -0.14
USHBP1-201ENST00000252597 RNF20Q5VTR2 975 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 USP16Q9Y5T5 823 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 KNDC1Q76NI1 1749 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 CDC42BPGQ6DT37 1551 aa14.16□□□□□ -0.14
USHBP1-201ENST00000252597 SLIT1O75093 1534 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 ARHGAP23Q9P227 1491 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 ATP5J2-PTCD1G3V325 749 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 PTCD1O75127 700 aaKnown RBP14.15□□□□□ -0.14
USHBP1-201ENST00000252597 BRF1Q92994 677 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 TRERF1Q96PN7 1200 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.15□□□□□ -0.14
USHBP1-201ENST00000252597 AATKQ6ZMQ8 1374 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 ANKRD26Q9UPS8 1709 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 HOXC9P31274 260 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 ME1P48163 572 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 FAM177A1Q8N128 213 aaPredicted RBP14.15□□□□□ -0.14
USHBP1-201ENST00000252597 EAF2Q96CJ1 260 aaPredicted RBP14.15□□□□□ -0.14
USHBP1-201ENST00000252597 SDF4Q9BRK5 362 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 A0A0G2JS52 829 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 PSME1Q06323 249 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 KIAA1524Q8TCG1 905 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 TTC14Q96N46 770 aa14.15□□□□□ -0.14
USHBP1-201ENST00000252597 CCDC171Q6TFL3 1326 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 TMX1Q9H3N1 280 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 SALL3Q9BXA9 1300 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 CRB1P82279 1406 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 PLEKHG3A1L390 1219 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 PSMA5P28066 241 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 PTPN21Q16825 1174 aa14.14□□□□□ -0.15
USHBP1-201ENST00000252597 BICC1Q9H694 974 aaKnown RBP14.14□□□□□ -0.15
USHBP1-201ENST00000252597 SLC27A2O14975 620 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 ESCO1Q5FWF5 840 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 ZNF589Q86UQ0 364 aaPredicted RBP14.13□□□□□ -0.15
USHBP1-201ENST00000252597 ZSCAN31Q96LW9 406 aaPredicted RBP14.13□□□□□ -0.15
USHBP1-201ENST00000252597 NCOA5Q9HCD5 579 aaKnown RBP14.13□□□□□ -0.15
USHBP1-201ENST00000252597 MRVI1Q9Y6F6 885 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 SETD1BQ9UPS6 1966 aaKnown RBP14.13□□□□□ -0.15
USHBP1-201ENST00000252597 HSP90AA4PQ58FG1 418 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 NBPF6Q5VWK0 638 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 NBPF4Q96M43 638 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 FLT4P35916 1363 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 SMC2O95347 1197 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 VPS53Q5VIR6 699 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 OTUD7BQ6GQQ9 843 aa14.13□□□□□ -0.15
USHBP1-201ENST00000252597 SH2B1Q9NRF2 756 aaPredicted RBP14.13□□□□□ -0.15
USHBP1-201ENST00000252597 PDCP20941 246 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 EVI5LQ96CN4 794 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms