RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 BCL11BQ9C0K0 894 aaPredicted RBP17.51■□□□□ 0.39
SDF2-201ENST00000247020 LAMB2P55268 1798 aa17.5■□□□□ 0.39
SDF2-201ENST00000247020 APBB1O00213 710 aa17.5■□□□□ 0.39
SDF2-201ENST00000247020 COPRSQ9NQ92 184 aa17.5■□□□□ 0.39
SDF2-201ENST00000247020 STAP2Q9UGK3 403 aa17.5■□□□□ 0.39
SDF2-201ENST00000247020 HMGB2P26583 209 aaKnown RBP17.49■□□□□ 0.39
SDF2-201ENST00000247020 ANP32AP39687 249 aaKnown RBP17.49■□□□□ 0.39
SDF2-201ENST00000247020 PDE1AP54750 535 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 EPHA10Q5JZY3 1008 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 C16orf71Q8IYS4 520 aaPredicted RBP17.49■□□□□ 0.39
SDF2-201ENST00000247020 ZBTB38Q8NAP3 1195 aaPredicted RBP17.49■□□□□ 0.39
SDF2-201ENST00000247020 MX1P20591 662 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 FOXO4P98177 505 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 G3BP1Q13283 466 aaKnown RBP eCLIP17.49■□□□□ 0.39
SDF2-201ENST00000247020 OS9Q13438 667 aaPredicted RBP17.49■□□□□ 0.39
SDF2-201ENST00000247020 HLFQ16534 295 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 KRT27Q7Z3Y8 459 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 NLRP10Q86W26 655 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 ZNF34Q8IZ26 560 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 LINC00116Q8NCU8 138 aa17.49■□□□□ 0.39
SDF2-201ENST00000247020 C4BP0C0L5 1744 aa17.48■□□□□ 0.39
SDF2-201ENST00000247020 RFX5P48382 616 aaPredicted RBP17.48■□□□□ 0.39
SDF2-201ENST00000247020 UPF2Q9HAU5 1272 aaKnown RBP17.48■□□□□ 0.39
SDF2-201ENST00000247020 AK9Q5TCS8 1911 aa17.47■□□□□ 0.39
SDF2-201ENST00000247020 USP42Q9H9J4 1324 aaKnown RBP17.47■□□□□ 0.39
SDF2-201ENST00000247020 CAMTA2O94983 1202 aa17.47■□□□□ 0.39
SDF2-201ENST00000247020 GSPT1P15170 499 aaKnown RBP17.47■□□□□ 0.39
SDF2-201ENST00000247020 CLEC4GQ6UXB4 293 aa17.47■□□□□ 0.39
SDF2-201ENST00000247020 CLASRPQ8N2M8 674 aaKnown RBP17.47■□□□□ 0.39
SDF2-201ENST00000247020 AK7Q96M32 723 aa17.47■□□□□ 0.39
SDF2-201ENST00000247020 ZNF652Q9Y2D9 606 aa17.47■□□□□ 0.39
SDF2-201ENST00000247020 PTPN12Q05209 780 aaKnown RBP17.46■□□□□ 0.39
SDF2-201ENST00000247020 PARP10Q53GL7 1025 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 LMBR1LQ6UX01 489 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 OTUD7AQ8TE49 926 aaPredicted RBP17.46■□□□□ 0.39
SDF2-201ENST00000247020 ARXQ96QS3 562 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 CCNL1Q9UK58 526 aaPredicted RBP17.46■□□□□ 0.39
SDF2-201ENST00000247020 FBXO3Q9UK99 471 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 TBC1D2BQ9UPU7 963 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 TTC41PQ6P2S7 1318 aa17.46■□□□□ 0.39
SDF2-201ENST00000247020 CDC45O75419 566 aa17.45■□□□□ 0.38
SDF2-201ENST00000247020 PTF1AQ7RTS3 328 aa17.45■□□□□ 0.38
SDF2-201ENST00000247020 PA2G4Q9UQ80 394 aaKnown RBP17.45■□□□□ 0.38
SDF2-201ENST00000247020 RPS6KA4O75676 772 aa17.45■□□□□ 0.38
SDF2-201ENST00000247020 FAM182BQ5T319 152 aa17.45■□□□□ 0.38
SDF2-201ENST00000247020 HSP90B1P14625 803 aaKnown RBP17.44■□□□□ 0.38
SDF2-201ENST00000247020 IL1RAPL2Q9NP60 686 aa17.44■□□□□ 0.38
SDF2-201ENST00000247020 C4AP0C0L4 1744 aa17.44■□□□□ 0.38
SDF2-201ENST00000247020 COL24A1Q17RW2 1714 aa17.44■□□□□ 0.38
SDF2-201ENST00000247020 DDX60Q8IY21 1712 aaKnown RBP17.43■□□□□ 0.38
SDF2-201ENST00000247020 SASH1O94885 1247 aa17.43■□□□□ 0.38
SDF2-201ENST00000247020 CSF1RP07333 972 aa17.43■□□□□ 0.38
SDF2-201ENST00000247020 JARID2Q92833 1246 aaPredicted RBP17.43■□□□□ 0.38
SDF2-201ENST00000247020 GPATCH3Q96I76 525 aa17.43■□□□□ 0.38
SDF2-201ENST00000247020 UBN2Q6ZU65 1347 aa17.43■□□□□ 0.38
SDF2-201ENST00000247020 SLC27A3Q5K4L6 730 aa17.42■□□□□ 0.38
SDF2-201ENST00000247020 FBXO41Q8TF61 875 aa17.42■□□□□ 0.38
SDF2-201ENST00000247020 UBR3Q6ZT12 1888 aa17.42■□□□□ 0.38
SDF2-201ENST00000247020 RGPD3A6NKT7 1758 aaPredicted RBP17.42■□□□□ 0.38
SDF2-201ENST00000247020 RGPD4Q7Z3J3 1758 aa17.42■□□□□ 0.38
SDF2-201ENST00000247020 CIAO1O76071 339 aa17.41■□□□□ 0.38
SDF2-201ENST00000247020 SDSP20132 328 aa17.41■□□□□ 0.38
SDF2-201ENST00000247020 GPTP24298 496 aa17.41■□□□□ 0.38
SDF2-201ENST00000247020 CASC1Q6TDU7 716 aa17.41■□□□□ 0.38
SDF2-201ENST00000247020 FAM89AQ96GI7 184 aa17.41■□□□□ 0.38
SDF2-201ENST00000247020 TRMT112Q9UI30 125 aaKnown RBP17.41■□□□□ 0.38
SDF2-201ENST00000247020 ERC2O15083 957 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 PDE8AO60658 829 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 SEC24BO95487 1268 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 TBC1D9Q6ZT07 1266 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 GPR108Q9NPR9 543 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 NARFQ9UHQ1 456 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 IRS4O14654 1257 aaPredicted RBP17.4■□□□□ 0.38
SDF2-201ENST00000247020 IFIT2P09913 472 aaKnown RBP17.4■□□□□ 0.38
SDF2-201ENST00000247020 IL15P40933 162 aaPredicted RBP17.4■□□□□ 0.38
SDF2-201ENST00000247020 DDRGK1Q96HY6 314 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 CHMP3Q9Y3E7 222 aa17.4■□□□□ 0.38
SDF2-201ENST00000247020 RTCBQ9Y3I0 505 aaKnown RBP17.4■□□□□ 0.38
SDF2-201ENST00000247020 SH3TC1Q8TE82 1336 aa17.39■□□□□ 0.38
SDF2-201ENST00000247020 LRP5O75197 1615 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 GLRX3O76003 335 aaKnown RBP17.39■□□□□ 0.37
SDF2-201ENST00000247020 CCDC57Q2TAC2 916 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 RTL5Q5HYW3 569 aaPredicted RBP17.39■□□□□ 0.37
SDF2-201ENST00000247020 NUTM1Q86Y26 1132 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 PI4K2BQ8TCG2 481 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 TBC1D32Q96NH3 1257 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 UTP14AQ9BVJ6 771 aaKnown RBP17.39■□□□□ 0.37
SDF2-201ENST00000247020 SIL1Q9H173 461 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 CASZ1Q86V15 1759 aa17.39■□□□□ 0.37
SDF2-201ENST00000247020 ADRA2BP18089 450 aa17.38■□□□□ 0.37
SDF2-201ENST00000247020 RXRBP28702 533 aa17.38■□□□□ 0.37
SDF2-201ENST00000247020 CTSWP56202 376 aa17.38■□□□□ 0.37
SDF2-201ENST00000247020 KLHDC4Q8TBB5 520 aa17.38■□□□□ 0.37
SDF2-201ENST00000247020 IPO9Q96P70 1041 aaKnown RBP17.38■□□□□ 0.37
SDF2-201ENST00000247020 ECHDC1Q9NTX5 307 aa17.38■□□□□ 0.37
SDF2-201ENST00000247020 EYA2O00167 538 aa17.37■□□□□ 0.37
SDF2-201ENST00000247020 GNPATO15228 680 aa17.37■□□□□ 0.37
SDF2-201ENST00000247020 AACSQ86V21 672 aa17.37■□□□□ 0.37
SDF2-201ENST00000247020 TTLL11Q8NHH1 800 aa17.37■□□□□ 0.37
SDF2-201ENST00000247020 NIP7Q9Y221 180 aaKnown RBP eCLIP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms