RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 SPATA31A5Q5VU36 1347 aa28.29■■■□□ 2.12
MSX2-201ENST00000239243 SPATA31A7Q8IWB4 1347 aa28.29■■■□□ 2.12
MSX2-201ENST00000239243 SLIT2O94813 1529 aa28.29■■■□□ 2.12
MSX2-201ENST00000239243 NUTM2BA6NNL0 878 aaPredicted RBP28.28■■■□□ 2.12
MSX2-201ENST00000239243 NUTM2EB1AL46 878 aaPredicted RBP28.28■■■□□ 2.12
MSX2-201ENST00000239243 FRAT2O75474 233 aaPredicted RBP28.28■■■□□ 2.12
MSX2-201ENST00000239243 FOXO4P98177 505 aa28.28■■■□□ 2.12
MSX2-201ENST00000239243 LMBR1LQ6UX01 489 aa28.28■■■□□ 2.12
MSX2-201ENST00000239243 NUTM2AQ8IVF1 878 aaPredicted RBP28.28■■■□□ 2.12
MSX2-201ENST00000239243 EVI5LQ96CN4 794 aa28.28■■■□□ 2.12
MSX2-201ENST00000239243 IL27Q8NEV9 243 aa28.28■■■□□ 2.12
MSX2-201ENST00000239243 RUFY2Q8WXA3 655 aa28.27■■■□□ 2.12
MSX2-201ENST00000239243 SGSM2O43147 1006 aa28.27■■■□□ 2.12
MSX2-201ENST00000239243 BARGINQ6ZT62 677 aa28.27■■■□□ 2.12
MSX2-201ENST00000239243 ZNF330Q9Y3S2 320 aaPredicted RBP28.27■■■□□ 2.12
MSX2-201ENST00000239243 DDIT3P35638 169 aa28.26■■■□□ 2.11
MSX2-201ENST00000239243 CYP19A1P11511 503 aaPredicted RBP28.26■■■□□ 2.11
MSX2-201ENST00000239243 PRIM1P49642 420 aaKnown RBP28.26■■■□□ 2.11
MSX2-201ENST00000239243 CCDC8Q9H0W5 538 aaPredicted RBP28.26■■■□□ 2.11
MSX2-201ENST00000239243 IL17RAQ96F46 866 aa28.25■■■□□ 2.11
MSX2-201ENST00000239243 DIAPH3Q9NSV4 1193 aa28.25■■■□□ 2.11
MSX2-201ENST00000239243 MAP3K15Q6ZN16 1313 aa28.25■■■□□ 2.11
MSX2-201ENST00000239243 HIP1O00291 1037 aa28.24■■■□□ 2.11
MSX2-201ENST00000239243 HSP90AB3PQ58FF7 597 aa28.24■■■□□ 2.11
MSX2-201ENST00000239243 KAT6BQ8WYB5 2073 aa28.24■■■□□ 2.11
MSX2-201ENST00000239243 CHMP3Q9Y3E7 222 aa28.23■■■□□ 2.11
MSX2-201ENST00000239243 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.23■■■□□ 2.11
MSX2-201ENST00000239243 TNNI3KQ59H18 835 aa28.23■■■□□ 2.11
MSX2-201ENST00000239243 FPGT-TNNI3KV9GXZ4 949 aa28.23■■■□□ 2.11
MSX2-201ENST00000239243 GIGYF2Q6Y7W6 1299 aaKnown RBP28.22■■■□□ 2.11
MSX2-201ENST00000239243 KIAA1211Q6ZU35 1233 aa28.22■■■□□ 2.11
MSX2-201ENST00000239243 SLC4A9Q96Q91 983 aa28.22■■■□□ 2.11
MSX2-201ENST00000239243 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.22■■■□□ 2.11
MSX2-201ENST00000239243 CCDC9Q9Y3X0 531 aaKnown RBP28.22■■■□□ 2.11
MSX2-201ENST00000239243 TFCP2Q12800 502 aa28.21■■■□□ 2.11
MSX2-201ENST00000239243 RAD50Q92878 1312 aa28.21■■■□□ 2.11
MSX2-201ENST00000239243 TLR7Q9NYK1 1049 aaKnown RBP28.2■■■□□ 2.11
MSX2-201ENST00000239243 PCCAP05165 728 aaPredicted RBP28.2■■■□□ 2.1
MSX2-201ENST00000239243 MCM2P49736 904 aa28.2■■■□□ 2.1
MSX2-201ENST00000239243 UBAP1LF5GYI3 381 aa28.19■■■□□ 2.1
MSX2-201ENST00000239243 HSPA4P34932 840 aa28.19■■■□□ 2.1
MSX2-201ENST00000239243 CWC27Q6UX04 472 aaKnown RBP28.19■■■□□ 2.1
MSX2-201ENST00000239243 IL6STP40189 918 aaPredicted RBP28.19■■■□□ 2.1
MSX2-201ENST00000239243 IL25Q9H293 177 aa28.19■■■□□ 2.1
MSX2-201ENST00000239243 IL15P40933 162 aaPredicted RBP28.18■■■□□ 2.1
MSX2-201ENST00000239243 GPR108Q9NPR9 543 aa28.18■■■□□ 2.1
MSX2-201ENST00000239243 ZBTB38Q8NAP3 1195 aaPredicted RBP28.18■■■□□ 2.1
MSX2-201ENST00000239243 PLA2G12BQ9BX93 195 aa28.18■■■□□ 2.1
MSX2-201ENST00000239243 ATP5JP18859 108 aa28.17■■■□□ 2.1
MSX2-201ENST00000239243 MARCH10Q8NA82 808 aaPredicted RBP28.17■■■□□ 2.1
MSX2-201ENST00000239243 ARXQ96QS3 562 aa28.17■■■□□ 2.1
MSX2-201ENST00000239243 ZBTB1Q9Y2K1 713 aa28.17■■■□□ 2.1
MSX2-201ENST00000239243 ANKRD36CQ5JPF3 1778 aa28.17■■■□□ 2.1
MSX2-201ENST00000239243 CIAO1O76071 339 aa28.16■■■□□ 2.1
MSX2-201ENST00000239243 LSG1Q9H089 658 aaKnown RBP28.16■■■□□ 2.1
MSX2-201ENST00000239243 DBNLQ9UJU6 430 aaKnown RBP28.16■■■□□ 2.1
MSX2-201ENST00000239243 JCADQ9P266 1359 aa28.16■■■□□ 2.1
MSX2-201ENST00000239243 NEK4P51957 841 aa28.16■■■□□ 2.1
MSX2-201ENST00000239243 FBXO3Q9UK99 471 aa28.16■■■□□ 2.1
MSX2-201ENST00000239243 ERVV-1B6SEH8 477 aa28.15■■■□□ 2.1
MSX2-201ENST00000239243 BOLA2Q9H3K6 86 aa28.15■■■□□ 2.1
MSX2-201ENST00000239243 PALD1Q9ULE6 856 aa28.15■■■□□ 2.1
MSX2-201ENST00000239243 CDHR2Q9BYE9 1310 aa28.15■■■□□ 2.1
MSX2-201ENST00000239243 DEKP35659 375 aaKnown RBP28.15■■■□□ 2.1
MSX2-201ENST00000239243 CICQ96RK0 1608 aaPredicted RBP28.15■■■□□ 2.1
MSX2-201ENST00000239243 EYA2O00167 538 aa28.14■■■□□ 2.1
MSX2-201ENST00000239243 CCDC57Q2TAC2 916 aa28.14■■■□□ 2.09
MSX2-201ENST00000239243 ATG9AQ7Z3C6 839 aa28.14■■■□□ 2.09
MSX2-201ENST00000239243 FSD1Q9BTV5 496 aa28.12■■■□□ 2.09
MSX2-201ENST00000239243 RFX7Q2KHR2 1363 aa28.12■■■□□ 2.09
MSX2-201ENST00000239243 CWC22Q9HCG8 908 aaKnown RBP28.12■■■□□ 2.09
MSX2-201ENST00000239243 RAB3GAP1Q15042 981 aa28.11■■■□□ 2.09
MSX2-201ENST00000239243 NLRP10Q86W26 655 aa28.11■■■□□ 2.09
MSX2-201ENST00000239243 DZIP3Q86Y13 1208 aaKnown RBP28.11■■■□□ 2.09
MSX2-201ENST00000239243 HLFQ16534 295 aa28.11■■■□□ 2.09
MSX2-201ENST00000239243 SMARCC1Q92922 1105 aaPredicted RBP28.11■■■□□ 2.09
MSX2-201ENST00000239243 ACSBG1Q96GR2 724 aa28.11■■■□□ 2.09
MSX2-201ENST00000239243 A0A0G2JS52 829 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 MCM4P33991 863 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 VPS72Q15906 364 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 FAM89AQ96GI7 184 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 SNRKQ9NRH2 765 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 FOXD4L1Q9NU39 408 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 NGLY1Q96IV0 654 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 DBNDD2Q9BQY9 259 aa28.1■■■□□ 2.09
MSX2-201ENST00000239243 NUP98P52948 1817 aa28.09■■■□□ 2.09
MSX2-201ENST00000239243 CSF1RP07333 972 aa28.09■■■□□ 2.09
MSX2-201ENST00000239243 ATP6V1AP38606 617 aa28.09■■■□□ 2.09
MSX2-201ENST00000239243 CCDC87Q9NVE4 849 aa28.09■■■□□ 2.09
MSX2-201ENST00000239243 LOC102724428A0A0B4J2F2 783 aa28.08■■■□□ 2.09
MSX2-201ENST00000239243 SIK1P57059 783 aa28.08■■■□□ 2.09
MSX2-201ENST00000239243 RREB1Q92766 1687 aa28.08■■■□□ 2.09
MSX2-201ENST00000239243 C8orf37Q96NL8 207 aa28.07■■■□□ 2.08
MSX2-201ENST00000239243 HAUS7Q99871 368 aa28.07■■■□□ 2.08
MSX2-201ENST00000239243 GPTP24298 496 aa28.07■■■□□ 2.08
MSX2-201ENST00000239243 EIF5P55010 431 aaKnown RBP28.07■■■□□ 2.08
MSX2-201ENST00000239243 NMIQ13287 307 aaPredicted RBP28.07■■■□□ 2.08
MSX2-201ENST00000239243 TICAM2Q86XR7 235 aa28.07■■■□□ 2.08
MSX2-201ENST00000239243 GBP4Q96PP9 640 aa28.07■■■□□ 2.08
MSX2-201ENST00000239243 ZNF609O15014 1411 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms