RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MAP4K1Q92918 833 aa22.38■■□□□ 1.17
CPSF3-201ENST00000238112 VPS37CA5D8V6 355 aaPredicted RBP22.37■■□□□ 1.17
CPSF3-201ENST00000238112 NEXNQ0ZGT2 675 aa22.37■■□□□ 1.17
CPSF3-201ENST00000238112 ME3Q16798 604 aa22.37■■□□□ 1.17
CPSF3-201ENST00000238112 DDX54Q8TDD1 881 aaKnown RBP22.37■■□□□ 1.17
CPSF3-201ENST00000238112 FSD1Q9BTV5 496 aa22.37■■□□□ 1.17
CPSF3-201ENST00000238112 SIL1Q9H173 461 aa22.37■■□□□ 1.17
CPSF3-201ENST00000238112 DNM1Q05193 864 aaKnown RBP22.37■■□□□ 1.17
CPSF3-201ENST00000238112 LARP1Q6PKG0 1096 aaKnown RBP22.37■■□□□ 1.17
CPSF3-201ENST00000238112 RNF20Q5VTR2 975 aa22.36■■□□□ 1.17
CPSF3-201ENST00000238112 BOLA2Q9H3K6 86 aa22.36■■□□□ 1.17
CPSF3-201ENST00000238112 AXIN2Q9Y2T1 843 aa22.36■■□□□ 1.17
CPSF3-201ENST00000238112 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.36■■□□□ 1.17
CPSF3-201ENST00000238112 PDIA6Q15084 440 aa22.36■■□□□ 1.17
CPSF3-201ENST00000238112 TLR7Q9NYK1 1049 aaKnown RBP22.36■■□□□ 1.17
CPSF3-201ENST00000238112 SLC27A2O14975 620 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 IGKV5-2P06315 115 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 HCLS1P14317 486 aaPredicted RBP22.35■■□□□ 1.17
CPSF3-201ENST00000238112 NECAB1Q8N987 351 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 USP25Q9UHP3 1055 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 ST3GAL1Q11201 340 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 GLIPR1L2Q4G1C9 344 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 SNRKQ9NRH2 765 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 TPCN1Q9ULQ1 816 aa22.35■■□□□ 1.17
CPSF3-201ENST00000238112 PDIA4P13667 645 aaKnown RBP22.34■■□□□ 1.17
CPSF3-201ENST00000238112 ZNF790Q6PG37 636 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 KLHL34Q8N239 644 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 A0A0D9SFI3 127 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 DTNBO60941 627 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 MYL6BP14649 208 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 KIAA2012Q0VF49 1180 aa22.34■■□□□ 1.17
CPSF3-201ENST00000238112 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.34■■□□□ 1.17
CPSF3-201ENST00000238112 CAMTA1Q9Y6Y1 1673 aa22.33■■□□□ 1.17
CPSF3-201ENST00000238112 LMTK3Q96Q04 1460 aa22.33■■□□□ 1.17
CPSF3-201ENST00000238112 ANKRD1Q15327 319 aa22.33■■□□□ 1.17
CPSF3-201ENST00000238112 LARP1BQ659C4 914 aaKnown RBP22.33■■□□□ 1.17
CPSF3-201ENST00000238112 BLOC1S2Q6QNY1 142 aa22.33■■□□□ 1.17
CPSF3-201ENST00000238112 SIPA1L3O60292 1781 aaPredicted RBP22.33■■□□□ 1.16
CPSF3-201ENST00000238112 NEURL1BA8MQ27 555 aa22.32■■□□□ 1.16
CPSF3-201ENST00000238112 SLC39A6Q13433 755 aa22.32■■□□□ 1.16
CPSF3-201ENST00000238112 RAPGEF4Q8WZA2 1011 aa22.32■■□□□ 1.16
CPSF3-201ENST00000238112 ADCY5O95622 1261 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 PDCP20941 246 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 GCKRQ14397 625 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 KRT28Q7Z3Y7 464 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 KLHDC4Q8TBB5 520 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 ERBB3P21860 1342 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 GIMAP6Q6P9H5 292 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 XAGE3Q8WTP9 111 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 MYD88Q99836 296 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 SLC52A2Q9HAB3 445 aa22.31■■□□□ 1.16
CPSF3-201ENST00000238112 MED23Q9ULK4 1368 aa22.3■■□□□ 1.16
CPSF3-201ENST00000238112 KRT85P78386 507 aa22.3■■□□□ 1.16
CPSF3-201ENST00000238112 METTL22Q9BUU2 404 aaPredicted RBP22.3■■□□□ 1.16
CPSF3-201ENST00000238112 HMG20BQ9P0W2 317 aa22.3■■□□□ 1.16
CPSF3-201ENST00000238112 RPS6KB1P23443 525 aa22.29■■□□□ 1.16
CPSF3-201ENST00000238112 COPS6Q7L5N1 327 aa22.29■■□□□ 1.16
CPSF3-201ENST00000238112 ADAMTS7Q9UKP4 1686 aa22.29■■□□□ 1.16
CPSF3-201ENST00000238112 UQCRHLA0A096LP55 91 aa22.29■■□□□ 1.16
CPSF3-201ENST00000238112 UQCRHP07919 91 aa22.29■■□□□ 1.16
CPSF3-201ENST00000238112 NPHP3Q7Z494 1330 aa22.28■■□□□ 1.16
CPSF3-201ENST00000238112 ZC3H6P61129 1189 aaKnown RBP22.28■■□□□ 1.16
CPSF3-201ENST00000238112 FUCA2Q9BTY2 467 aa22.28■■□□□ 1.16
CPSF3-201ENST00000238112 ZNF142P52746 1687 aaPredicted RBP22.28■■□□□ 1.16
CPSF3-201ENST00000238112 NPHP4O75161 1426 aaPredicted RBP22.28■■□□□ 1.16
CPSF3-201ENST00000238112 KDM4AO75164 1064 aa22.28■■□□□ 1.16
CPSF3-201ENST00000238112 TCEANC2Q96MN5 208 aa22.28■■□□□ 1.16
CPSF3-201ENST00000238112 NLRP2Q9NX02 1062 aa22.28■■□□□ 1.16
CPSF3-201ENST00000238112 EPHA10Q5JZY3 1008 aa22.27■■□□□ 1.16
CPSF3-201ENST00000238112 CDC37L1Q7L3B6 337 aa22.27■■□□□ 1.16
CPSF3-201ENST00000238112 ZNF589Q86UQ0 364 aaPredicted RBP22.27■■□□□ 1.16
CPSF3-201ENST00000238112 NFATC2IPQ8NCF5 419 aa22.27■■□□□ 1.16
CPSF3-201ENST00000238112 ALDH8A1Q9H2A2 487 aaPredicted RBP22.27■■□□□ 1.16
CPSF3-201ENST00000238112 MRC1P22897 1456 aa22.27■■□□□ 1.16
CPSF3-201ENST00000238112 TATP17735 454 aaPredicted RBP22.26■■□□□ 1.15
CPSF3-201ENST00000238112 SASS6Q6UVJ0 657 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 PDCL3Q9H2J4 239 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 ANKRD13DQ6ZTN6 518 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 FERMT3Q86UX7 667 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 MPNDQ8N594 471 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 COPRSQ9NQ92 184 aa22.26■■□□□ 1.15
CPSF3-201ENST00000238112 KDM6AO15550 1401 aaPredicted RBP22.26■■□□□ 1.15
CPSF3-201ENST00000238112 PLCB2Q00722 1185 aa22.25■■□□□ 1.15
CPSF3-201ENST00000238112 COL9A3Q14050 684 aaPredicted RBP22.25■■□□□ 1.15
CPSF3-201ENST00000238112 CCDC192P0DO97 292 aa22.25■■□□□ 1.15
CPSF3-201ENST00000238112 PHKG2P15735 406 aa22.25■■□□□ 1.15
CPSF3-201ENST00000238112 TOB2Q14106 344 aaPredicted RBP22.25■■□□□ 1.15
CPSF3-201ENST00000238112 TSGA10IPQ3SY00 556 aa22.25■■□□□ 1.15
CPSF3-201ENST00000238112 JCADQ9P266 1359 aa22.25■■□□□ 1.15
CPSF3-201ENST00000238112 TAF5LO75529 589 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 ATP5JP18859 108 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 KRT32Q14532 448 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 TTC6Q86TZ1 520 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 TTC5Q8N0Z6 440 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 EDC3Q96F86 508 aaKnown RBP22.24■■□□□ 1.15
CPSF3-201ENST00000238112 ZNF496Q96IT1 587 aaPredicted RBP22.24■■□□□ 1.15
CPSF3-201ENST00000238112 TAF6LQ9Y6J9 622 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 ELP1O95163 1332 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 TRPM3Q9HCF6 1732 aaPredicted RBP22.24■■□□□ 1.15
CPSF3-201ENST00000238112 TNNI3KQ59H18 835 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms