RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 NECTIN1Q15223 517 aa19.5■□□□□ 0.71
UBE3D-201ENST00000237186 H7C1W4 665 aa19.5■□□□□ 0.71
UBE3D-201ENST00000237186 IL2RBP14784 551 aa19.5■□□□□ 0.71
UBE3D-201ENST00000237186 PIP4K2AP48426 406 aaPredicted RBP19.5■□□□□ 0.71
UBE3D-201ENST00000237186 ZNF445P59923 1031 aa19.5■□□□□ 0.71
UBE3D-201ENST00000237186 SIL1Q9H173 461 aa19.5■□□□□ 0.71
UBE3D-201ENST00000237186 TLR7Q9NYK1 1049 aaKnown RBP19.5■□□□□ 0.71
UBE3D-201ENST00000237186 AK9Q5TCS8 1911 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 CCDC171Q6TFL3 1326 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 A0A087WZG4 1122 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 UBE3BQ7Z3V4 1068 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 KLHDC4Q8TBB5 520 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 MAP4K1Q92918 833 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 PANK2Q9BZ23 570 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 LIMCH1Q9UPQ0 1083 aa19.49■□□□□ 0.71
UBE3D-201ENST00000237186 ATP5JP18859 108 aa19.48■□□□□ 0.71
UBE3D-201ENST00000237186 VPS53Q5VIR6 699 aa19.48■□□□□ 0.71
UBE3D-201ENST00000237186 ZSWIM6Q9HCJ5 1215 aa19.48■□□□□ 0.71
UBE3D-201ENST00000237186 ABCA3Q99758 1704 aa19.48■□□□□ 0.71
UBE3D-201ENST00000237186 PRPF40AO75400 957 aaKnown RBP19.48■□□□□ 0.71
UBE3D-201ENST00000237186 AK2P54819 239 aa19.48■□□□□ 0.71
UBE3D-201ENST00000237186 LTBP4Q8N2S1 1624 aa19.47■□□□□ 0.71
UBE3D-201ENST00000237186 NMIQ13287 307 aaPredicted RBP19.47■□□□□ 0.71
UBE3D-201ENST00000237186 TNNI3KQ59H18 835 aa19.47■□□□□ 0.71
UBE3D-201ENST00000237186 RUFY3Q7L099 469 aa19.47■□□□□ 0.71
UBE3D-201ENST00000237186 BOLA2Q9H3K6 86 aa19.47■□□□□ 0.71
UBE3D-201ENST00000237186 FPGT-TNNI3KV9GXZ4 949 aa19.47■□□□□ 0.71
UBE3D-201ENST00000237186 LAMB4A4D0S4 1761 aa19.46■□□□□ 0.71
UBE3D-201ENST00000237186 TNS2Q63HR2 1409 aa19.46■□□□□ 0.71
UBE3D-201ENST00000237186 ATP5J2-PTCD1G3V325 749 aa19.46■□□□□ 0.71
UBE3D-201ENST00000237186 PTCD1O75127 700 aaKnown RBP19.46■□□□□ 0.71
UBE3D-201ENST00000237186 NOL8Q76FK4 1167 aaKnown RBP19.46■□□□□ 0.71
UBE3D-201ENST00000237186 WDR33Q9C0J8 1336 aaKnown RBP19.46■□□□□ 0.71
UBE3D-201ENST00000237186 KCPQ6ZWJ8 1503 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 FOXO4P98177 505 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 FAM227BQ96M60 508 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 ARXQ96QS3 562 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 RTN4Q9NQC3 1192 aaKnown RBP19.45■□□□□ 0.7
UBE3D-201ENST00000237186 ZKSCAN1P17029 563 aaPredicted RBP19.45■□□□□ 0.7
UBE3D-201ENST00000237186 PRPF40BQ6NWY9 871 aaKnown RBP19.45■□□□□ 0.7
UBE3D-201ENST00000237186 GPT2Q8TD30 523 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 DBNLQ9UJU6 430 aaKnown RBP19.45■□□□□ 0.7
UBE3D-201ENST00000237186 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.45■□□□□ 0.7
UBE3D-201ENST00000237186 RFX7Q2KHR2 1363 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 JCADQ9P266 1359 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 MED23Q9ULK4 1368 aa19.45■□□□□ 0.7
UBE3D-201ENST00000237186 CASTP20810 708 aaKnown RBP19.44■□□□□ 0.7
UBE3D-201ENST00000237186 TFCP2Q12800 502 aa19.44■□□□□ 0.7
UBE3D-201ENST00000237186 CCDC191Q8NCU4 936 aa19.44■□□□□ 0.7
UBE3D-201ENST00000237186 ZSCAN31Q96LW9 406 aaPredicted RBP19.44■□□□□ 0.7
UBE3D-201ENST00000237186 CWC25Q9NXE8 425 aaPredicted RBP19.44■□□□□ 0.7
UBE3D-201ENST00000237186 RBM8AQ9Y5S9 174 aaKnown RBP19.44■□□□□ 0.7
UBE3D-201ENST00000237186 ROBO1Q9Y6N7 1651 aa19.44■□□□□ 0.7
UBE3D-201ENST00000237186 CREB3L3Q68CJ9 461 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 TTLL7Q6ZT98 887 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 TICAM2Q86XR7 235 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 JARID2Q92833 1246 aaPredicted RBP19.43■□□□□ 0.7
UBE3D-201ENST00000237186 FSD1Q9BTV5 496 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 GPR108Q9NPR9 543 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 CYP46A1Q9Y6A2 500 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 MBD3O95983 291 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 ADCK5Q3MIX3 580 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 ZSCAN23Q3MJ62 389 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 TSGA10IPQ3SY00 556 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 CAVIN1Q6NZI2 390 aaKnown RBP19.43■□□□□ 0.7
UBE3D-201ENST00000237186 LMBR1LQ6UX01 489 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 JAKMIP1Q96N16 626 aaKnown RBP19.43■□□□□ 0.7
UBE3D-201ENST00000237186 SH2B1Q9NRF2 756 aaPredicted RBP19.43■□□□□ 0.7
UBE3D-201ENST00000237186 PDRG1Q9NUG6 133 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 UBR2Q8IWV8 1755 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 ARFGEF2Q9Y6D5 1785 aa19.43■□□□□ 0.7
UBE3D-201ENST00000237186 A0A0D9SFI3 127 aa19.42■□□□□ 0.7
UBE3D-201ENST00000237186 A1BGP04217 495 aa19.42■□□□□ 0.7
UBE3D-201ENST00000237186 PSMA5P28066 241 aa19.42■□□□□ 0.7
UBE3D-201ENST00000237186 ALDH8A1Q9H2A2 487 aaPredicted RBP19.42■□□□□ 0.7
UBE3D-201ENST00000237186 RPAP1Q9BWH6 1393 aaPredicted RBP19.41■□□□□ 0.7
UBE3D-201ENST00000237186 ATG3Q9NT62 314 aa19.41■□□□□ 0.7
UBE3D-201ENST00000237186 PAPPAQ13219 1627 aa19.41■□□□□ 0.7
UBE3D-201ENST00000237186 SLC27A2O14975 620 aa19.41■□□□□ 0.7
UBE3D-201ENST00000237186 DDX54Q8TDD1 881 aaKnown RBP19.41■□□□□ 0.7
UBE3D-201ENST00000237186 EVA1CP58658 441 aa19.4■□□□□ 0.7
UBE3D-201ENST00000237186 RNF20Q5VTR2 975 aa19.4■□□□□ 0.7
UBE3D-201ENST00000237186 USPL1Q5W0Q7 1092 aa19.4■□□□□ 0.7
UBE3D-201ENST00000237186 HAUS7Q99871 368 aa19.4■□□□□ 0.7
UBE3D-201ENST00000237186 AHDC1Q5TGY3 1603 aaPredicted RBP19.4■□□□□ 0.7
UBE3D-201ENST00000237186 NCLP19338 710 aaKnown RBP19.39■□□□□ 0.7
UBE3D-201ENST00000237186 ATG9AQ7Z3C6 839 aa19.39■□□□□ 0.7
UBE3D-201ENST00000237186 HMG20BQ9P0W2 317 aa19.39■□□□□ 0.7
UBE3D-201ENST00000237186 TAF5LO75529 589 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 TRIM28Q13263 835 aaKnown RBP19.39■□□□□ 0.69
UBE3D-201ENST00000237186 FOXD4L5Q5VV16 416 aaPredicted RBP19.39■□□□□ 0.69
UBE3D-201ENST00000237186 VSIG10Q8N0Z9 540 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 TMEM87AQ8NBN3 555 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 FOXD4L4Q8WXT5 416 aaPredicted RBP19.39■□□□□ 0.69
UBE3D-201ENST00000237186 CHAMP1Q96JM3 812 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 ISCA1Q9BUE6 129 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 TEX13AQ9BXU3 409 aaPredicted RBP19.39■□□□□ 0.69
UBE3D-201ENST00000237186 STRN4Q9NRL3 753 aa19.39■□□□□ 0.69
UBE3D-201ENST00000237186 CPA1P15085 419 aa19.38■□□□□ 0.69
UBE3D-201ENST00000237186 IL15P40933 162 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms