RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 CTAGE5O15320 804 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 TSPY3P0CV98 308 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 TSPY8P0CW00 308 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 UTP14AQ9BVJ6 771 aaKnown RBP21.88■■□□□ 1.09
SMPD3-201ENST00000219334 CHPF2Q9P2E5 772 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 F8W031 263 aaPredicted RBP21.88■■□□□ 1.09
SMPD3-201ENST00000219334 NEK1Q96PY6 1258 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 PYM1Q9BRP8 204 aaKnown RBP21.88■■□□□ 1.09
SMPD3-201ENST00000219334 ORC3Q9UBD5 711 aaPredicted RBP21.88■■□□□ 1.09
SMPD3-201ENST00000219334 SLC39A6Q13433 755 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 RTCBQ9Y3I0 505 aaKnown RBP21.88■■□□□ 1.09
SMPD3-201ENST00000219334 PARP3Q9Y6F1 533 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 ZNF804AQ7Z570 1209 aa21.88■■□□□ 1.09
SMPD3-201ENST00000219334 GOLGA6L7A0A1B0GV03 622 aa21.87■■□□□ 1.09
SMPD3-201ENST00000219334 GRM1Q13255 1194 aa21.87■■□□□ 1.09
SMPD3-201ENST00000219334 TCERG1LQ5VWI1 586 aa21.87■■□□□ 1.09
SMPD3-201ENST00000219334 SYCP3Q8IZU3 236 aa21.87■■□□□ 1.09
SMPD3-201ENST00000219334 SYCE3A1L190 88 aa21.87■■□□□ 1.09
SMPD3-201ENST00000219334 JDP2Q8WYK2 163 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 NBPF7P0C2Y1 421 aaPredicted RBP21.86■■□□□ 1.09
SMPD3-201ENST00000219334 ZC3H12CQ9C0D7 883 aaKnown RBP21.86■■□□□ 1.09
SMPD3-201ENST00000219334 FAM193AP78312 1265 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 FERMT2Q96AC1 680 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 LRRC59Q96AG4 307 aaKnown RBP21.86■■□□□ 1.09
SMPD3-201ENST00000219334 KRT23Q9C075 422 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 LRRC27Q9C0I9 530 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 CCDC40Q4G0X9 1142 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 TDRD12Q587J7 1177 aaKnown RBP21.86■■□□□ 1.09
SMPD3-201ENST00000219334 SLC26A6Q9BXS9 759 aa21.86■■□□□ 1.09
SMPD3-201ENST00000219334 TOP1P11387 765 aaKnown RBP21.86■■□□□ 1.09
SMPD3-201ENST00000219334 ZSCAN12O43309 604 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 MTIF2P46199 727 aaKnown RBP21.85■■□□□ 1.09
SMPD3-201ENST00000219334 MCM5P33992 734 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 WTAPQ15007 396 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 CCDC183Q5T5S1 534 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 C20orf194Q5TEA3 1177 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 NAA16Q6N069 864 aaPredicted RBP21.85■■□□□ 1.09
SMPD3-201ENST00000219334 FSIP1Q8NA03 581 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 RHPN1Q8TCX5 695 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 SIRT1Q96EB6 747 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 IQSEC3Q9UPP2 1182 aaPredicted RBP21.85■■□□□ 1.09
SMPD3-201ENST00000219334 ALDH1L1O75891 902 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 DZIP3Q86Y13 1208 aaKnown RBP21.85■■□□□ 1.09
SMPD3-201ENST00000219334 ESR2Q92731 530 aa21.85■■□□□ 1.09
SMPD3-201ENST00000219334 C11orf95C9JLR9 678 aaPredicted RBP21.84■■□□□ 1.09
SMPD3-201ENST00000219334 KIAA0754O94854 1291 aa21.84■■□□□ 1.09
SMPD3-201ENST00000219334 CABLES1Q8TDN4 633 aa21.84■■□□□ 1.09
SMPD3-201ENST00000219334 ERMNQ8TAM6 284 aa21.84■■□□□ 1.09
SMPD3-201ENST00000219334 LMBR1LQ6UX01 489 aa21.84■■□□□ 1.09
SMPD3-201ENST00000219334 TMTC2Q8N394 836 aa21.84■■□□□ 1.09
SMPD3-201ENST00000219334 SLC4A4Q9Y6R1 1079 aa21.83■■□□□ 1.09
SMPD3-201ENST00000219334 USO1O60763 962 aaKnown RBP21.83■■□□□ 1.09
SMPD3-201ENST00000219334 FBLN1P23142 703 aa21.83■■□□□ 1.09
SMPD3-201ENST00000219334 IL15P40933 162 aaPredicted RBP21.83■■□□□ 1.09
SMPD3-201ENST00000219334 PPIP5K1Q6PFW1 1433 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 TBCAO75347 108 aaKnown RBP21.83■■□□□ 1.08
SMPD3-201ENST00000219334 CKAP2LQ8IYA6 745 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 RIMS2Q9UQ26 1411 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 MACROD2A1Z1Q3 448 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 USP8P40818 1118 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 KSR2Q6VAB6 950 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 C16orf71Q8IYS4 520 aaPredicted RBP21.83■■□□□ 1.08
SMPD3-201ENST00000219334 VTI1AQ96AJ9 217 aa21.83■■□□□ 1.08
SMPD3-201ENST00000219334 PRKCSHP14314 528 aaPredicted RBP21.82■■□□□ 1.08
SMPD3-201ENST00000219334 PICALMQ13492 652 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 TAF3Q5VWG9 929 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 NUP88Q99567 741 aaPredicted RBP21.82■■□□□ 1.08
SMPD3-201ENST00000219334 ZNF608Q9ULD9 1512 aaPredicted RBP21.82■■□□□ 1.08
SMPD3-201ENST00000219334 GRM8O00222 908 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 YEATS4O95619 227 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 GNAQP50148 359 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 CNNM2Q9H8M5 875 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 KIF5CO60282 957 aa21.82■■□□□ 1.08
SMPD3-201ENST00000219334 CTNNBL1Q8WYA6 563 aaPredicted RBP21.82■■□□□ 1.08
SMPD3-201ENST00000219334 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.82■■□□□ 1.08
SMPD3-201ENST00000219334 KIF2AO00139 706 aaPredicted RBP21.81■■□□□ 1.08
SMPD3-201ENST00000219334 CTNNA2P26232 953 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 BICD1Q96G01 975 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 ASXL2Q76L83 1435 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 CCDC174Q6PII3 467 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 VEZTQ9HBM0 779 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 GSTTP1A0A1W2PQM5 241 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 HSPA2P54652 639 aa21.81■■□□□ 1.08
SMPD3-201ENST00000219334 IFIT1BQ5T764 474 aaKnown RBP21.81■■□□□ 1.08
SMPD3-201ENST00000219334 LARP6Q9BRS8 491 aaKnown RBP21.81■■□□□ 1.08
SMPD3-201ENST00000219334 DDX19AQ9NUU7 478 aaKnown RBP21.81■■□□□ 1.08
SMPD3-201ENST00000219334 B4DLN1 442 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 GJB2P29033 226 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 MRPL12P52815 198 aaKnown RBP21.8■■□□□ 1.08
SMPD3-201ENST00000219334 KANK3Q6NY19 840 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 UBXN4Q92575 508 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 HOOK3Q86VS8 718 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 RAB11FIP4Q86YS3 637 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 FAM114A1Q8IWE2 563 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 ARHGAP45Q92619 1136 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 EYA3Q99504 573 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 NSFL1CQ9UNZ2 370 aaKnown RBP21.8■■□□□ 1.08
SMPD3-201ENST00000219334 CCDC66A2RUB6 948 aa21.8■■□□□ 1.08
SMPD3-201ENST00000219334 LUZP1Q86V48 1076 aa21.79■■□□□ 1.08
SMPD3-201ENST00000219334 WDR7Q9Y4E6 1490 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms