RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NFATC4Q14934 902 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 QPCTQ16769 361 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 HNRNPA1L2Q32P51 320 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 VTCN1Q7Z7D3 282 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TFAP2BQ92481 460 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ISG20Q96AZ6 181 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CREB3L1Q96BA8 519 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GPR62Q9BZJ7 368 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MTCL1Q9Y4B5 1905 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 VIRMAQ69YN4 1812 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF623O75123 536 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC5A2P31639 672 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 EIF1P41567 113 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 HOXA1P49639 335 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ATP1B3P54709 279 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CTXN1P60606 82 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 PTGR1Q14914 329 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 PAFAH1B3Q15102 231 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 PNCKQ6P2M8 343 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IRF2BP2Q7Z5L9 587 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 DMBX1Q8NFW5 382 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 DHRS9Q9BPW9 319 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 NIPAL2Q9H841 368 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR6C2Q9NZP2 312 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ACOX3O15254 700 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TPPPO94811 219 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TNFSF15O95150 251 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 EMX2Q04743 252 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FAM74A1Q5RGS3 127 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 IRF2BP1Q8IU81 584 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 C1orf87Q8N0U7 546 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 IQCF1Q8N6M8 205 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 OR5J2Q8NH18 312 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MYLIPQ8WY64 445 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF317Q96PQ6 595 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MKS1Q9NXB0 559 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SLC6A5Q9Y345 797 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RGPD4Q7Z3J3 1758 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SVILO95425 2214 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MEGF11A6BM72 1044 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ADARB1P78563 741 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ARHGAP8P85298 464 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 NCBP2-AS2Q69YL0 99 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GDPD3Q7L5L3 318 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF595Q8IYB9 648 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 HS3ST5Q8IZT8 346 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SYNPOQ8N3V7 929 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 OR10X1Q8NGY0 326 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF675Q8TD23 568 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 AENQ8WTP8 325 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TRIB1Q96RU8 372 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PBDC1Q9BVG4 233 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CALHM2Q9HA72 323 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 C14orf119Q9NWQ9 140 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TAS2R8Q9NYW2 309 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RNF6Q9Y252 685 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 KIAA1217Q5T5P2 1943 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 E9PI62 339 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PIAS1O75925 651 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ENPP1P22413 925 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GALNT2Q10471 571 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 DOC2AQ14183 400 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TATDN3Q17R31 274 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 UBE2UQ5VVX9 321 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SLC22A10Q63ZE4 541 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ATG9BQ674R7 924 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CHCHD4Q8N4Q1 142 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 OR52E2Q8NGJ4 325 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 STT3BQ8TCJ2 826 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 HAS2Q92819 552 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ULBP2Q9BZM5 246 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 C19orf12Q9NSK7 152 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FETUBQ9UGM5 382 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 DUSP13Q9UII6 198 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FXYD6-FXYD2A0A087WZ82 144 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MYOCOSA0A1B0GUC4 107 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FCER2P06734 321 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF728P0DKX0 622 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 IDH3AP50213 366 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 EIF2B1Q14232 305 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CTSL3PQ5NE16 218 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MORN1Q5T089 497 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 AKR1C8PQ5T2L2 129 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 METTL2BQ6P1Q9 378 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 BANPQ8N9N5 519 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZFP90Q8TF47 636 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 HPS1Q92902 700 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TRMT2BQ96GJ1 504 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RNF170Q96K19 258 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM59Q9BXS4 323 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 EIF5A2Q9GZV4 153 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FXYD6Q9H0Q3 95 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 AKTIPQ9H8T0 292 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SLC17A7Q9P2U7 560 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 UNC13CQ8NB66 2214 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GPR32O75388 356 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 OPN1SWP03999 348 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FNTBP49356 437 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 UBE2G2P60604 165 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms