RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RFPL3O75679 317 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 TNFAIP8O95379 198 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CCNYL3P0C7X3 344 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CDH2P19022 906 aaPredicted RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 ITIH1P19827 911 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CBLP22681 906 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CLK3P49761 638 aaKnown RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 ZNF136P52737 540 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CLDN6P56747 220 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 TAS2R41P59536 307 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 INSM1Q01101 510 aaPredicted RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 DGCR6Q14129 220 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 MRPL14Q6P1L8 145 aaKnown RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 C9orf40Q8IXQ3 194 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 AMER2Q8N7J2 671 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 AQP11Q8NBQ7 271 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 MORN4Q8NDC4 146 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 PRSS33Q8NF86 280 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 SLC7A13Q8TCU3 470 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 ADIPOR1Q96A54 375 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 MCHR1Q99705 422 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 G6PC3Q9BUM1 346 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 GRIP2Q9C0E4 1043 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 ZNF696Q9H7X3 374 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 PAPOLBQ9NRJ5 636 aaKnown RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 AKAP7Q9P0M2 348 aaPredicted RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 COPS7AQ9UBW8 275 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 LOXL2Q9Y4K0 774 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 PCDHGA10Q9Y5H3 936 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 NPIPB9F8W1W9 429 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 AP3D1O14617 1153 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 BCAS1O75363 584 aaPredicted RBP15.58■□□□□ 0.08
CLN3-252ENST00000636907 GASTP01350 101 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 EPHA2P29317 976 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 EMP2P54851 167 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 PLAURQ03405 335 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 ILKQ13418 452 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 EBPQ15125 230 aaKnown RBP15.58■□□□□ 0.08
CLN3-252ENST00000636907 CSRP2Q16527 193 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 ENTPD8Q5MY95 495 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 FAM199XQ6PEV8 388 aaPredicted RBP15.58■□□□□ 0.08
CLN3-252ENST00000636907 ZNF614Q8N883 585 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 METTL21AQ8WXB1 218 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 DIO2Q92813 273 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 LCORQ96JN0 433 aaPredicted RBP15.58■□□□□ 0.08
CLN3-252ENST00000636907 GAL3ST4Q96RP7 486 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 CDC6Q99741 560 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 ULBP3Q9BZM4 244 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 POFUT2Q9Y2G5 429 aa15.58■□□□□ 0.08
CLN3-252ENST00000636907 C2orf92A0A1B0GVN3 265 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 SH3PXD2BA1X283 911 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 FRG2CA6NGY1 282 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 BCKDKO14874 412 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 UGT2B11O75310 529 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 GKN3PP0CG01 181 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 PRG2P13727 222 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 POU2F1P14859 743 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 DRD5P21918 477 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 SLC5A2P31639 672 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 ETV5P41161 510 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 GPR143P51810 404 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 E2F1Q01094 437 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 NPRL3Q12980 569 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 ZNF141Q15928 474 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 DECR1Q16698 335 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.57■□□□□ 0.08
CLN3-252ENST00000636907 PODNL1Q6PEZ8 512 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 PLEKHM3Q6ZWE6 761 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 NR4A3Q92570 626 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 GTPBP3Q969Y2 492 aaKnown RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 EFHD2Q96C19 240 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 LRFN5Q96NI6 719 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 GABARAPL3Q9BY60 117 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 ZNF556Q9HAH1 456 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 TEX51A0A1B0GUA7 166 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 H3BNH8 94 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 OR10H3O60404 316 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 CYP7B1O75881 506 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 OXSR1O95747 527 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 KLK3P07288 261 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 ATP12AP54707 1039 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 TPD52P55327 224 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 ZNF691Q5VV52 312 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 TTC33Q6PID6 262 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 THAP5Q7Z6K1 395 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 C8orf59Q8N0T1 100 aaPredicted RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 ZNF786Q8N393 782 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 ADAMTS16Q8TE57 1224 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 CNOT9Q92600 299 aaKnown RBP15.57■□□□□ 0.08
CLN3-252ENST00000636907 MR1Q95460 341 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 CRB3Q9BUF7 120 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 STRADBQ9C0K7 418 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 NRSN2Q9GZP1 204 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 WWTR1Q9GZV5 400 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 ARMC7Q9H6L4 198 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 NCDNQ9UBB6 729 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 MYRFQ9Y2G1 1151 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 B3GALT1Q9Y5Z6 326 aa15.57■□□□□ 0.08
CLN3-252ENST00000636907 KIF26BQ2KJY2 2108 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 PMS2P1A4D2B8 440 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms