RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UCHL1P09936 223 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 UBL4AP11441 157 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 CXCL3P19876 107 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 BMP8BP34820 402 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 MMP12P39900 470 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 TAF13Q15543 124 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 AANATQ16613 207 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 OCLNQ16625 522 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SCGB2B2Q4G0G5 96 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 QSOX2Q6ZRP7 698 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 PRICKLE2Q7Z3G6 844 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 BMP8AQ7Z5Y6 402 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 TMEM25Q86YD3 366 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 COX18Q8N8Q8 333 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 OR4C15Q8NGM1 316 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 WDR20Q8TBZ3 569 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 DNAJA3Q96EY1 480 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SAMD11Q96NU1 681 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ZNF436Q9C0F3 470 aaPredicted RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 TDP1Q9NUW8 608 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 NTNG1Q9Y2I2 539 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 F5P12259 2224 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 A0A087WUU8 490 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 TBC1D3BA6NDS4 549 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 FAM171A2A8MVW0 826 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 RFXAPO00287 272 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 MAGEB4O15481 346 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 CHP2O43745 196 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 RCBTB2O95199 551 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 IGHA2P01877 340 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 EIF4EP06730 217 aaKnown RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 GKN3PP0CG01 181 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZNF30P17039 623 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 CCND3P30281 292 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 TLX1P31314 330 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZNF750Q32MQ0 723 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 CDONQ4KMG0 1287 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 HBMQ6B0K9 141 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 HAGHLQ6PII5 290 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 CD300LGQ6UXG3 332 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 APOOLQ6UXV4 268 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 NUP43Q8NFH3 380 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 PRRC1Q96M27 445 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 WDR26Q9H7D7 661 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 Q9Y3F1 56 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SPACA6W5XKT8 324 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 RNF13O43567 381 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 KRT33AO76009 404 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 IGLV3-27P01718 113 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 GDNFP39905 211 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 EIF4EBP2Q13542 120 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 TPBGQ13641 420 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.36□□□□□ -0.75
CLN3-244ENST00000636147 RAB12Q6IQ22 244 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 OAFQ86UD1 273 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SLC9B2Q86UD5 537 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 GID4Q8IVV7 300 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 CCDC36Q8IYA8 594 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 OR4K13Q8NH42 304 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 OR10G6Q8NH81 332 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZFPM2Q8WW38 1151 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ATF6BQ99941 703 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 KLF16Q9BXK1 252 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 ERVMER34-1Q9H9K5 563 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 TREM1Q9NP99 234 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 CUEDC1Q9NWM3 386 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 HPF1Q9NWY4 346 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SDHAF2Q9NX18 166 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 TAAR2Q9P1P5 351 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 USP36Q9P275 1121 aaKnown RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 ATPIF1Q9UII2 106 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 CACNA1IQ9P0X4 2223 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 OR2AT4A6NND4 320 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SELPP16109 830 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 NPPBP16860 134 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 GDI2P50395 445 aaKnown RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 GLYR1Q49A26 553 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 BEX5Q5H9J7 111 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 LY6G5CQ5SRR4 150 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 LDLRAD1Q5T700 205 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 PAQR7Q86WK9 346 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZNF676Q8N7Q3 588 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 OR5M3Q8NGP4 307 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 TSEN15Q8WW01 171 aaKnown RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 ZNF689Q96CS4 500 aaPredicted RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 PDXPQ96GD0 296 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SPNS1Q9H2V7 528 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 ISG20L2Q9H9L3 353 aaKnown RBP10.36□□□□□ -0.75
CLN3-244ENST00000636147 EMC7Q9NPA0 242 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 SLC7A7Q9UM01 511 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 PLEKHA6Q9Y2H5 1048 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 NEUROG3Q9Y4Z2 214 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 WNT6Q9Y6F9 365 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 AP1M2Q9Y6Q5 423 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 NRXN2Q9P2S2 1712 aa10.36□□□□□ -0.75
CLN3-244ENST00000636147 TMEM129A0AVI4 362 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TRABD2BA6NFA1 517 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZNF860A6NHJ4 632 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZNF879B4DU55 563 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 H3BNC9 293 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms