RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZNF888P0CJ79 500 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SMIM10L1P0DMW3 83 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 MYL9P24844 172 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 HLA-DMAP28067 261 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 MLLT3P42568 568 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 DUSP8Q13202 625 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 EIPR1Q53HC9 387 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 EXOSC6Q5RKV6 272 aaKnown RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 ASPGQ86U10 573 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SPRYD4Q8WW59 207 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SMIM10Q96HG1 83 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 RNF170Q96K19 258 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 C1QTNF7Q9BXJ2 289 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 TWSG1Q9GZX9 223 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 UBQLN3Q9H347 655 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 KRCC1Q9NPI7 259 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 HINT3Q9NQE9 182 aaKnown RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 PTGFRNQ9P2B2 879 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 COMMD3Q9UBI1 195 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 PHF11Q9UIL8 331 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 WDR45Q9Y484 360 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 A0A0B4J293 547 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SHISA3A0PJX4 238 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SLC2A10O95528 541 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 CELP19835 753 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 RPS4Y1P22090 263 aaKnown RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 APEX1P27695 318 aaKnown RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 NDUFS1P28331 727 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 DAB2P98082 770 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 GID4Q8IVV7 300 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 NEIL3Q8TAT5 605 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 LCN9Q8WX39 176 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 ARMC5Q96C12 935 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 TM4SF19Q96DZ7 209 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 RNF31Q96EP0 1072 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SAMD8Q96LT4 415 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SECISBP2Q96T21 854 aaKnown RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 PRSS27Q9BQR3 290 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 TMED9Q9BVK6 235 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 HDHD5Q9BXW7 423 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 FN3KQ9H479 309 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 FGF22Q9HCT0 170 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 TNFRSF10DQ9UBN6 386 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 MOSPD1Q9UJG1 213 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF223Q9UK11 482 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SLC7A7Q9UM01 511 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 SOCS6O14544 535 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 HPGDSO60760 199 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 ZGLP1P0C6A0 271 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 FAM157BP0CG42 384 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 MYOGP15173 224 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SSTR4P31391 388 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 RNF144AP50876 292 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SNRPNP63162 240 aaKnown RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CDK10Q15131 360 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 ZNF791Q3KP31 576 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 MZT2AQ6P582 158 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 TMEM91Q6ZNR0 172 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 NUDT18Q6ZVK8 323 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CPOQ8IVL8 374 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 DUSP18Q8NEJ0 188 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 OR4K14Q8NGD5 310 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 JPH3Q8WXH2 748 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SENP5Q96HI0 755 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 RIPOR3Q96MK2 946 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 OR2M4Q96R27 311 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 PLA2G2FQ9BZM2 168 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 ZNF350Q9GZX5 532 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 RNF32Q9H0A6 362 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CACYBPQ9HB71 228 aaKnown RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CSNK1G3Q9Y6M4 447 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 UNC119BA6NIH7 251 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 LYPD3O95274 346 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 HOXC4P09017 264 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SLC2A2P11168 524 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CPN2P22792 545 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 MAP2K3P46734 347 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 GCGRP47871 477 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 QPRTQ15274 297 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 DUSP5Q16690 384 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 FBXO42Q6P3S6 717 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 USP53Q70EK8 1073 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 CXXC5Q7LFL8 322 aaKnown RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 RNF113BQ8IZP6 322 aaKnown RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 Q8N402 240 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 OR4E2Q8NGC2 313 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 OR14C36Q8NHC7 312 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 FLVCR1-AS1Q8TAF5 88 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SERINC2Q96SA4 455 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 SDF2Q99470 211 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 MARCH7Q9H992 704 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 TBC1D17Q9HA65 648 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 RBFOX1Q9NWB1 397 aaKnown RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 H2AFY2Q9P0M6 372 aaPredicted RBP11.89□□□□□ -0.51
LINC00540-203ENST00000631321 TBC1D29Q9UFV1 150 aa11.89□□□□□ -0.51
LINC00540-203ENST00000631321 PRSS38A1L453 326 aa11.88□□□□□ -0.51
LINC00540-203ENST00000631321 TRAPPC13A5PLN9 417 aa11.88□□□□□ -0.51
LINC00540-203ENST00000631321 PRR23AA6NEV1 266 aa11.88□□□□□ -0.51
LINC00540-203ENST00000631321 A8MV72 311 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms