RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CENPLQ8N0S6 344 aaPredicted RBP5.65□□□□□ -1.5
CUX1-220ENST00000607092 MMGT1Q8N4V1 131 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 PTGR2Q8N8N7 351 aaPredicted RBP5.65□□□□□ -1.5
CUX1-220ENST00000607092 ZNF610Q8N9Z0 462 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 OR2M3Q8NG83 312 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 OR52B6Q8NGF0 335 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 KCTD4Q8WVF5 259 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 FIG4Q92562 907 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ARL8AQ96BM9 186 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ZBTB8AQ96BR9 441 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 TM4SF18Q96CE8 201 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 MTBPQ96DY7 904 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 C1GALT1C1Q96EU7 318 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ZBED6CLQ96FA7 236 aaPredicted RBP5.65□□□□□ -1.5
CUX1-220ENST00000607092 PLPPR2Q96GM1 343 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ZNF681Q96N22 645 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 BBS4Q96RK4 519 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 NAPGQ99747 312 aaPredicted RBP5.65□□□□□ -1.5
CUX1-220ENST00000607092 RHNO1Q9BSD3 238 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 REG4Q9BYZ8 158 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ACTR6Q9GZN1 396 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 DSN1Q9H410 356 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 SLC35C2Q9NQQ7 365 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 TMEM160Q9NX00 188 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ADAM21Q9UKJ8 722 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 LAMP3Q9UQV4 416 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 DTX4Q9Y2E6 619 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 ZNF337Q9Y3M9 751 aa5.65□□□□□ -1.5
CUX1-220ENST00000607092 CHD3Q12873 2000 aaKnown RBP5.65□□□□□ -1.51
CUX1-220ENST00000607092 IGLV3-32A0A0A0MS00 114 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 C7orf72A4D263 438 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 H3BML4 177 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 H3BQF6 201 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 OVOL3O00110 214 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 OR7A17O14581 309 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 EIF1AYO14602 144 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 TP73O15350 636 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 SCO2O43819 266 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 FADS1O60427 444 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 ULK1O75385 1050 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 INHBAP08476 426 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 HPGDP15428 266 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 TAC1P20366 129 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 NTSP30990 170 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 MAGEA4P43358 317 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 EIF1AXP47813 144 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 SERPINB9P50453 376 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 ZNF41P51814 821 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 GAS1P54826 345 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 NAA20P61599 178 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 RAC1P63000 192 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 MRPS35P82673 323 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 PRR5P85299 388 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 DLG1Q12959 904 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 TRAF3Q13114 568 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 GUSBP1Q15486 140 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 WHAMMP3Q1A5X7 153 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 TMEM201Q5SNT2 666 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 C1QTNF12Q5T7M4 302 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 LGSNQ5TDP6 509 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 MROH9Q5TGP6 573 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 PPP4R4Q6NUP7 873 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 GALNT18Q6P9A2 607 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 STAC2Q6ZMT1 411 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 LCA5Q86VQ0 697 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 P2RY8Q86VZ1 359 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 CCDC25Q86WR0 208 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 WFDC8Q8IUA0 241 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 SLC43A2Q8N370 569 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 GTPBP8Q8N3Z3 284 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 C1orf52Q8N6N3 182 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 CEP112Q8N8E3 955 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 OR4F6Q8NGB9 312 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 OR2V1Q8NHB1 315 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 ACTRT2Q8TDY3 377 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 FBF1Q8TES7 1133 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 SMAP2Q8WU79 429 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 AKAP1Q92667 903 aaKnown RBP eCLIP5.64□□□□□ -1.511e-6■■■■□ 21.5
CUX1-220ENST00000607092 EFHD2Q96C19 240 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 PHF21BQ96EK2 531 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 C11orf24Q96F05 449 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 CNRIP1Q96F85 164 aaPredicted RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 ADAD1Q96M93 576 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 MRPL57Q9BQC6 102 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 C1QTNF3Q9BXJ4 246 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 BEX2Q9BXY8 128 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 POTEKPQ9BYX7 375 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 VPS11Q9H270 941 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 MRPL46Q9H2W6 279 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 SLCO5A1Q9H2Y9 848 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 FOLH1BQ9HBA9 442 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 MIEF1Q9NQG6 463 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 YAE1D1Q9NRH1 226 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 DDX18Q9NVP1 670 aaKnown RBP5.64□□□□□ -1.51
CUX1-220ENST00000607092 PGPEP1Q9NXJ5 209 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 HEY2Q9UBP5 337 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 PCTPQ9UKL6 214 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 EXPH5Q8NEV8 1989 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 KIAA1549Q9HCM3 1950 aa5.64□□□□□ -1.51
CUX1-220ENST00000607092 A0A1W2PS29 197 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms