RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PROC	P04070	461 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	LOX	P28300	417 aa	Predicted RBP	9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	PCYT1A	P49585	367 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	CLK3	P49761	638 aa	Known RBP	9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	ACKR1	Q16570	336 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	TMEM44	Q2T9K0	475 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	CLEC6A	Q6EIG7	209 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	GSPT2	Q8IYD1	628 aa	Known RBP	9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	METTL25	Q8N6Q8	603 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	GATS	Q8NAP1	163 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	FBXO30	Q8TB52	745 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	SLC9A6	Q92581	669 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	PERP	Q96FX8	193 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776		Q96MF0	132 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	CCL19	Q99731	98 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	NPAS1	Q99742	590 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	SLC39A3	Q9BRY0	314 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	TXLNGY	Q9BZA5	131 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	KLHL4	Q9C0H6	718 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	C12orf65	Q9H3J6	166 aa	Known RBP	9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	ELOVL5	Q9NYP7	299 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	DCDC2	Q9UHG0	476 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	CLEC4A	Q9UMR7	237 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	PROCR	Q9UNN8	238 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	CCL27	Q9Y4X3	112 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	AP4B1	Q9Y6B7	739 aa		9.46	□□□□□ -0.9
LSM4-205	ENST00000597776	PCNX3	Q9H6A9	2034 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	IGLV3-32	A0A0A0MS00	114 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	LINC01387	J3KSC0	135 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	EIF1AY	O14602	144 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PDPK1	O15530	556 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	AKAP10	O43572	662 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	GLRA3	O75311	464 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	SEC22B	O75396	215 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	RSL1D1	O76021	490 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	KCNH1	O95259	989 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	OPN1LW	P04000	364 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	HEXA	P06865	529 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	CD8B	P10966	210 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	EIF1AX	P47813	144 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PRKAG1	P54619	331 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PSMD4	P55036	377 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	RPS3A	P61247	264 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PRR5	P85299	388 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	C17orf67	Q0P5P2	114 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	KIAA0040	Q15053	153 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	SGCB	Q16585	318 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	ZNF385B	Q569K4	471 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	CFAP157	Q5JU67	520 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	IKBIP	Q70UQ0	350 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	FAM214B	Q7L5A3	538 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	SZRD1	Q7Z422	152 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	YTHDF3	Q7Z739	585 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	ZAR1	Q86SH2	424 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	OR4C3	Q8NH37	302 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	CLHC1	Q8NHS4	586 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	FAM76A	Q8TAV0	307 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	GPR151	Q8TDV0	419 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PIGT	Q969N2	578 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	CCDC126	Q96EE4	140 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	ARSG	Q96EG1	525 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	OTUB1	Q96FW1	271 aa	Predicted RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	COX4I2	Q96KJ9	171 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	PIP5K1A	Q99755	562 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	KLHDC3	Q9BQ90	382 aa		9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	RRAGD	Q9NQL2	400 aa	Predicted RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	MRTO4	Q9UKD2	239 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	FN1	P02751	2386 aa	Known RBP	9.45	□□□□□ -0.9
LSM4-205	ENST00000597776	ZAN	Q9Y493	2812 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	TRIM64	A6NGJ6	449 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	TRIM64B	A6NI03	449 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	SMAD7	O15105	426 aa	Known RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	PLIN3	O60664	434 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	OXSR1	O95747	527 aa	Predicted RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	SHBG	P04278	402 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	THBD	P07204	575 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	ACP2	P11117	423 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	PRPS2	P11908	318 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	FCGR2A	P12318	317 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	EFNA1	P20827	205 aa	Predicted RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	FPR1	P21462	350 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	TBXA2R	P21731	343 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	GPC1	P35052	558 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	MAP3K8	P41279	467 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	DNAJB13	P59910	316 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	FGFBP1	Q14512	234 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	GLYR1	Q49A26	553 aa	Predicted RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	FIGNL1	Q6PIW4	674 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	SH2D5	Q6ZV89	423 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	IFT20	Q8IY31	132 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	LRRC75A-AS1	Q8N1F1	130 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	OR2T11	Q8NH01	316 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	OR10D3	Q8NH80	312 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	PPP1R14C	Q8TAE6	165 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	HOXB13	Q92826	284 aa	Predicted RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	SH3YL1	Q96HL8	342 aa	Predicted RBP	9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	RNF145	Q96MT1	663 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	TSSK3	Q96PN8	268 aa		9.44	□□□□□ -0.9
LSM4-205	ENST00000597776	RHOXF2	Q9BQY4	288 aa		9.44	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms