RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 DPY30Q9C005 99 aa11.35□□□□□ -0.59
UPF1-203ENST00000594504 BHLHE41Q9C0J9 482 aaPredicted RBP11.35□□□□□ -0.59
UPF1-203ENST00000594504 SERHLQ9NQF3 203 aa11.35□□□□□ -0.59
UPF1-203ENST00000594504 AIG1Q9NVV5 245 aa11.35□□□□□ -0.59
UPF1-203ENST00000594504 A0A1W2PRB8 838 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 MBD3L4A6NDZ8 208 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 MBD3L3A6NE82 208 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 FRG2CA6NGY1 282 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 TUBAL3A6NHL2 446 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 MBD3L5A6NJ08 208 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 UPK1AO00322 258 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 SNPHO15079 494 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 ANKRD28O15084 1053 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 ERN1O75460 977 aaKnown RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 PSMG1O95456 288 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 ALDOCP09972 364 aaKnown RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 EPXP11678 715 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 HOXB4P17483 251 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 DGKQP52824 942 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 CLNS1AP54105 237 aaKnown RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 ADAM8P78325 824 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 PLCXD2Q0VAA5 305 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 DPY19L1Q2PZI1 675 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 FBXW10Q5XX13 1052 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 SLC30A6Q6NXT4 461 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 EPGNQ6UW88 154 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 WDSUB1Q8N9V3 476 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 CHDHQ8NE62 594 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 MBD3L2Q8NHZ7 208 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 OR5P2Q8WZ92 322 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 TESCQ96BS2 214 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 LRRC46Q96FV0 321 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 DUSP26Q9BV47 211 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 OSBPL11Q9BXB4 747 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 CALHM2Q9HA72 323 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 FOLH1BQ9HBA9 442 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 KLRF1Q9NZS2 232 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 JKAMPQ9P055 326 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 GPR55Q9Y2T6 319 aaPredicted RBP11.34□□□□□ -0.59
UPF1-203ENST00000594504 MED12Q93074 2177 aa11.34□□□□□ -0.59
UPF1-203ENST00000594504 DOCK7Q96N67 2140 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 HIVEP1P15822 2718 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 TTC36A6NLP5 189 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 C17orf51A8MQB3 221 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 TO15178 435 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 REM1O75628 298 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 TMIGD3P0DMS9 266 aaPredicted RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 IDO1P14902 403 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 NAGAP17050 411 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 EFNA1P20827 205 aaPredicted RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 TCEA1P23193 301 aaKnown RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 PEX19P40855 299 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 ZNF155Q12901 538 aaPredicted RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 POU4F3Q15319 338 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 SF3B4Q15427 424 aaKnown RBP eCLIP11.33□□□□□ -0.63e-7■■□□□ 14
UPF1-203ENST00000594504 PGS1Q32NB8 556 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 LSM12Q3MHD2 195 aaKnown RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 OR5M10Q6IEU7 315 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 LUZP2Q86TE4 346 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 OR8J2Q8NGG1 315 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 OR14L1PQ8NHC6 308 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 PSMA8Q8TAA3 256 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 ZPLD1Q8TCW7 415 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 NUDT8Q8WV74 236 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 TMBIM1Q969X1 311 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 INTS12Q96CB8 462 aaKnown RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 OR52B2Q96RD2 323 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 C3orf14Q9HBI5 128 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 NEUROD4Q9HD90 331 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 NTMQ9P121 344 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 FOXD3Q9UJU5 478 aaPredicted RBP11.33□□□□□ -0.6
UPF1-203ENST00000594504 FBXL2Q9UKC9 423 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 GPR45Q9Y5Y3 372 aa11.33□□□□□ -0.6
UPF1-203ENST00000594504 CELSR1Q9NYQ6 3014 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 A0A1W2PPR1 153 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 B4DXG7 233 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 E9PBE3 544 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 H0Y3Z8 333 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 RNASET2O00584 256 aaKnown RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 UBDO15205 165 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 POLR3GO15318 223 aaPredicted RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 EMC8O43402 210 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 EDF1O60869 148 aaKnown RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 CBR3O75828 277 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 ATE1O95260 518 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 ACTL6AO96019 429 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 CT45A8P0DMV1 189 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 CT45A9P0DMV2 189 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 CYP4B1P13584 511 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 CPN1P15169 458 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 OPRM1P35372 400 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 AQP5P55064 265 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 CORO7P57737 925 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 PRR5P85299 388 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 RCAN2Q14206 197 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 ZNHIT3Q15649 155 aaPredicted RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 GSTA3Q16772 222 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 PDCD4Q53EL6 469 aaKnown RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 CT45A2Q5DJT8 189 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 ANXA8L1Q5VT79 327 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms