RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 VDAC3Q9Y277 283 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 LOC100506127A0A0U1RQW1 187 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 HRO43593 1189 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 NELFEP18615 380 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 PTNP21246 168 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 HSF2Q03933 536 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PLP2Q04941 152 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CBFBQ13951 182 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CEACAM7Q14002 265 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 WDR53Q7Z5U6 358 aaPredicted RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 PIK3R3Q92569 461 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 THOC3Q96J01 351 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 HIST1H2AAQ96QV6 131 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PINK1Q9BXM7 581 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 DDX31Q9H8H2 851 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 SPTA1P02549 2419 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 RIF1Q5UIP0 2472 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 NPIPA5A0A0B4J1W7 369 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CASC3O15234 703 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 KLK10O43240 276 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 RGS10O43665 173 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PRKRAO75569 313 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 GGT1P19440 569 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CAPGP40121 348 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 ZNF84P51523 738 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 CLRN1P58418 232 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 TPRG1LQ5T0D9 272 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 RPL13AP3Q6NVV1 102 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 BORAQ6PGQ7 559 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 OR51A7Q8NH64 312 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 GTF2H4Q92759 462 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 AMDHD1Q96NU7 426 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 GLIPR2Q9H4G4 154 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 EVA1AQ9H8M9 152 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 PLEKHA1Q9HB21 404 aa9.2□□□□□ -0.94
LIG3-216ENST00000593099 RPL36Q9Y3U8 105 aaKnown RBP9.2□□□□□ -0.94
LIG3-216ENST00000593099 OR2A25A4D2G3 310 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 GAPDHSO14556 408 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 TOX3O15405 576 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 HCRTR1O43613 425 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PNMTP11086 282 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ABOP16442 354 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 HK1P19367 917 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 MYL9P24844 172 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 SFTPDP35247 375 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CYB561P49447 251 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 LTB4RQ15722 352 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 IQCCQ4KMZ1 466 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 RPS26P11Q5JNZ5 115 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 CCNJQ5T5M9 372 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 RPTNQ6XPR3 784 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 SERPINA11Q86U17 422 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CACTIN-AS1Q8N1I8 211 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PELI3Q8N2H9 469 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PACRGLQ8N7B6 248 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ANKFN1Q8N957 763 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 UBASH3BQ8TF42 649 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 DNASE2BQ8WZ79 361 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 DCUN1D5Q9BTE7 237 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 C20orf27Q9GZN8 174 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 TUBB1Q9H4B7 451 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CKLFQ9UBR5 152 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 MCTS1Q9ULC4 181 aaKnown RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 ENPP4Q9Y6X5 453 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 IGHV3-20A0A0C4DH32 117 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 AGAP14A8MT82 685 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 NME4O00746 187 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 OR2T1O43869 369 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CH25HO95992 272 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PEPDP12955 493 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 DCTP40126 519 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 UGT8Q16880 541 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 SLC22A10Q63ZE4 541 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 KLHL17Q6TDP4 642 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PMM1Q92871 262 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 AIFM2Q9BRQ8 373 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 FOLH1BQ9HBA9 442 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 RAB26Q9ULW5 256 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 SPAARA0A1B0GVQ0 90 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 MKRN2OSH3BPM6 223 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 KLRC4-KLRK1H3BQV0 150 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 H7C2Y5 167 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 NRG2O14511 850 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 ETS2P15036 469 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PUM1Q14671 1186 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIG3-216ENST00000593099 FRMPD2BQ6IN97 320 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 CXXC5Q7LFL8 322 aaKnown RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 CLVS1Q8IUQ0 354 aaPredicted RBP9.19□□□□□ -0.94
LIG3-216ENST00000593099 OR8H2Q8N162 312 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 FANK1Q8TC84 345 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 COX4I2Q96KJ9 171 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 OR4K3Q96R72 315 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 IL4I1Q96RQ9 567 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 SP140LQ9H930 580 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 ING3Q9NXR8 418 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PCDHGB1Q9Y5G3 927 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 IGHV5-51A0A0C4DH38 117 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 DAPL1A0PJW8 107 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 D6RAR5 112 aa9.19□□□□□ -0.94
LIG3-216ENST00000593099 PGRMC2O15173 223 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms