RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NTHL1P78549 312 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 PLOD1Q02809 727 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 PUDPQ08623 228 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 COX10Q12887 443 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC10A1Q14973 349 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 CCDC57Q2TAC2 916 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 LINC01620Q4KN68 170 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 ASPHD2Q6ICH7 369 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 CCBE1Q6UXH8 406 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 BAIAP2L2Q6UXY1 529 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 GCNT7Q6ZNI0 430 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 TMEM17Q86X19 198 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 CDC20BQ86Y33 519 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 ZNF671Q8TAW3 534 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 MYLPFQ96A32 169 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 RAB7BQ96AH8 199 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 DTNBP1Q96EV8 351 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 VPS39Q96JC1 886 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 FOXN4Q96NZ1 517 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 TESK2Q96S53 571 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 DHX33Q9H6R0 707 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 MRPL39Q9NYK5 338 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 DPM3Q9P2X0 92 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 PRODH2Q9UF12 536 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 A0A1W2PNV4 684 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 PPIAL4DF5H284 164 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 SDHDO14521 159 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 CTAGE5O15320 804 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 PHF1O43189 567 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 DUX1O43812 170 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 ZNF354AO60765 605 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 ZNF253O75346 499 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 RHOBTB1O94844 696 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 OPN1LWP04000 364 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 CLUP10909 449 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 RPL4P36578 427 aaKnown RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 MAGEA9P43362 315 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 IL18R1Q13478 541 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 ATXN7L3Q14CW9 347 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 Q1RN00 199 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 EIPR1Q53HC9 387 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 TEX44Q53QW1 395 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 TCTEX1D4Q5JR98 221 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 NCR3LG1Q68D85 454 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 OR8G2PQ6IF36 304 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 SULT1C3Q6IMI6 304 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC25A24Q6NUK1 477 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 C2orf66Q6UXQ4 117 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 STAC2Q6ZMT1 411 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 PRSS48Q7RTY5 328 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 BPIFB2Q8N4F0 458 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 GMCL1P1Q8NEA9 526 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 RAET1EQ8TD07 263 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 TRIM44Q96DX7 344 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 TMEM80Q96HE8 168 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 DHTKD1Q96HY7 919 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 DUSP16Q9BY84 665 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 ELOVL4Q9GZR5 314 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 DHRS4-AS1Q9P1J3 65 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 KIF16BQ96L93 1317 aa2.87□□□□□ -1.95
SMCHD1-209ENST00000583441 USP6P35125 1406 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 A0A087WWV3 80 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 FAM220BPB1ANY3 271 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 GPAA1O43292 621 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 BCL2L11O43521 198 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 VENTXO95231 258 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 IGHG3P01860 377 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 HBQ1P09105 142 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 ALPIP09923 528 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 LAMP1P11279 417 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 PGAM2P15259 253 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 BCL3P20749 454 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 ATP5A1P25705 553 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 PSMA5P28066 241 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 HMGCLP35914 325 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 DLSTP36957 453 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 PRPHP41219 470 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 XCR1P46094 333 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 NUCB2P80303 420 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 RUNX3Q13761 415 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 TIMM50Q3ZCQ8 353 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC22A6Q4U2R8 563 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 CELF3Q5SZQ8 465 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 SYT10Q6XYQ8 523 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 ARMCX2Q7L311 632 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 DPY19L4Q7Z388 723 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 P2RY8Q86VZ1 359 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 UNC5CLQ8IV45 518 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 DENND6BQ8NEG7 585 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 SPRYD4Q8WW59 207 aaPredicted RBP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 PPP1R16AQ96I34 528 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 CASD1Q96PB1 797 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 OR5M11Q96RB7 305 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 GLT8D2Q9H1C3 349 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 POLR3FQ9H1D9 316 aaPredicted RBP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 AATFQ9NY61 560 aaKnown RBP eCLIP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 AIPL1Q9NZN9 384 aa2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 CGNQ9P2M7 1197 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-209ENST00000583441 DUSP12Q9UNI6 340 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms