RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 Q9N2J8 555 aa9.53□□□□□ -0.88
RFFL-209ENST00000581265 MID1IP1Q9NPA3 183 aa9.53□□□□□ -0.88
RFFL-209ENST00000581265 MYNNQ9NPC7 610 aa9.53□□□□□ -0.88
RFFL-209ENST00000581265 MIEF1Q9NQG6 463 aa9.53□□□□□ -0.88
RFFL-209ENST00000581265 PLSCR4Q9NRQ2 329 aa9.53□□□□□ -0.88
RFFL-209ENST00000581265 H3BML4 177 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 H3BQF6 201 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 HAX1O00165 279 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 SEC14L5O43304 696 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 AQP8O94778 261 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 FCGR2AP12318 317 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 GABRA3P34903 492 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 MAP3K8P41279 467 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 FOXA1P55317 472 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 NAA20P61599 178 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 STX5Q13190 355 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 SGCBQ16585 318 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 HMBOX1Q6NT76 420 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 APOOLQ6UXV4 268 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 TRMT10CQ7L0Y3 403 aaKnown RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 YTHDF3Q7Z739 585 aaKnown RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 GGNQ86UU5 652 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 PHC2Q8IXK0 858 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 PPP1R14CQ8TAE6 165 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 IGFBPL1Q8WX77 278 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 TMEM158Q8WZ71 300 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 HOXB13Q92826 284 aaPredicted RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 GFM2Q969S9 779 aaKnown RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 CCDC126Q96EE4 140 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 METTL2AQ96IZ6 378 aaKnown RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 Q96MF0 132 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 HS3ST6Q96QI5 342 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 CCL19Q99731 98 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 GSX2Q9BZM3 304 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 UBTD1Q9HAC8 227 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 C3orf14Q9HBI5 128 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 HHATLQ9HCP6 504 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 DDX18Q9NVP1 670 aaKnown RBP9.52□□□□□ -0.89
RFFL-209ENST00000581265 STOML1Q9UBI4 398 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 DCDC2Q9UHG0 476 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 PROCRQ9UNN8 238 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 USF3Q68DE3 2245 aa9.52□□□□□ -0.89
RFFL-209ENST00000581265 COL6A5A8TX70 2615 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 ALG1L2C9J202 215 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 G3V2L1 256 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 GOLGA8RI6L899 631 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 KLF4O43474 513 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 UTS2O95399 124 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 ANGPTL1O95841 491 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 IFNA2P01563 188 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 THBDP07204 575 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 PAX1P15863 534 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 PPP3CBP16298 524 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 NTSP30990 170 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 KIAA0040Q15053 153 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.51□□□□□ -0.89
RFFL-209ENST00000581265 ANKRD34AQ69YU3 496 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 NOXRED1Q6NXP6 359 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 SH2D5Q6ZV89 423 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 IKBIPQ70UQ0 350 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 ZNF550Q7Z398 422 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 CCNYL1Q8N7R7 359 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 MNS1Q8NEH6 495 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 ZC3HAV1LQ96H79 300 aaKnown RBP9.51□□□□□ -0.89
RFFL-209ENST00000581265 ZNF764Q96H86 408 aaPredicted RBP9.51□□□□□ -0.89
RFFL-209ENST00000581265 GMPPAQ96IJ6 420 aaPredicted RBP9.51□□□□□ -0.89
RFFL-209ENST00000581265 TBL1XR1Q9BZK7 514 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 KLHL4Q9C0H6 718 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 RRAGDQ9NQL2 400 aaPredicted RBP9.51□□□□□ -0.89
RFFL-209ENST00000581265 PAQR5Q9NXK6 330 aaPredicted RBP9.51□□□□□ -0.89
RFFL-209ENST00000581265 CCL27Q9Y4X3 112 aa9.51□□□□□ -0.89
RFFL-209ENST00000581265 PRR14LQ5THK1 2151 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 HEATR5AQ86XA9 2040 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 ZANQ9Y493 2812 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 A0A087WZY1 265 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 GXYLT2A0PJZ3 443 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 C7orf72A4D263 438 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 NPIPB8E9PQR5 432 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 ADAMDEC1O15204 470 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 RIPK2O43353 540 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 TMCC2O75069 709 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 RSL1D1O76021 490 aaKnown RBP9.5□□□□□ -0.89
RFFL-209ENST00000581265 NKX2-2O95096 273 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 KCNH1O95259 989 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 IGKV1D-16P01601 117 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 NGFRP08138 427 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 PYGBP11216 843 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 PRPS2P11908 318 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 ZNF17P17021 662 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 PSMA4P25789 261 aaKnown RBP9.5□□□□□ -0.89
RFFL-209ENST00000581265 SLC6A8P48029 635 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 RFX3P48380 749 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 IMPG1Q17R60 797 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 GRAMD1BQ3KR37 738 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 BEX5Q5H9J7 111 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 ZYG11AQ6WRX3 759 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 STAC2Q6ZMT1 411 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 PLEKHM3Q6ZWE6 761 aa9.5□□□□□ -0.89
RFFL-209ENST00000581265 ZNF551Q7Z340 670 aaPredicted RBP9.5□□□□□ -0.89
RFFL-209ENST00000581265 EXOC3L1Q86VI1 746 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms