RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMEM80Q96HE8 168 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 COMMD4Q9H0A8 199 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 RAB17Q9H0T7 212 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 EHD1Q9H4M9 534 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 ISG20L2Q9H9L3 353 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 YAE1D1Q9NRH1 226 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 EIF3LQ9Y262 564 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 GMPPBQ9Y5P6 360 aa3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-204ENST00000581226 GPRASP1Q5JY77 1395 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 RNF222A6NCQ9 220 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 SAGE2PA6NJ88 616 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 DHRS7CA6NNS2 312 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 WASHC1A8K0Z3 465 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 SCRG1O75711 98 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 ACTL6AO96019 429 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 CD55P08174 381 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 RRASP10301 218 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 NOVA1P51513 510 aaKnown RBP3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 GPC3P51654 580 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 ZNF154Q13106 437 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 CDKN3Q16667 212 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 WSCD1Q658N2 575 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 SCYL2Q6P3W7 929 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 GPATCH11Q8N954 259 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 ANKRD20A12PQ8NF67 263 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 GIPC3Q8TF64 312 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 ARNTL2Q8WYA1 636 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 FRAT1Q92837 279 aaPredicted RBP3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 PSMG2Q969U7 264 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 SAMD8Q96LT4 415 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 TECTBQ96PL2 329 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 LPAR2Q9HBW0 351 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 SOHLH2Q9NX45 425 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 PPIAL4AQ9Y536 164 aa3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 COL16A1Q07092 1604 aaPredicted RBP3.14□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM231BA6NCW3 169 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 WASH3PC4AMC7 463 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 RASGRF2O14827 1237 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 TRIM3O75382 744 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 SEC22BO75396 215 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 CABYRO75952 493 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 UQCRBP14927 111 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 H2AFXP16104 143 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 GNPDA1P46926 289 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 DHPSP49366 369 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 ATXN3P54252 364 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 OSTNP61366 133 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 RND3P61587 244 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 OR2B11Q5JQS5 317 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 METTL11BQ5VVY1 283 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 IRGCQ6NXR0 463 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 WASH2PQ6VEQ5 465 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 SCARA5Q6ZMJ2 495 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 FRA10AC1Q70Z53 315 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 CYS1Q717R9 158 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 LRRC70Q7Z2Q7 622 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 HSD11B1LQ7Z5J1 315 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM179BQ7Z7N9 219 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 TGIF2LYQ8IUE0 185 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 ARL10Q8N8L6 244 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 MRPL43Q8N983 215 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 STKLD1Q8NE28 680 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 OR10H4Q8NGA5 316 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 SETD7Q8WTS6 366 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 MARC2Q969Z3 335 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 PINX1Q96BK5 328 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 UPRTQ96BW1 309 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 C14orf79Q96F83 325 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 NOL4LQ96MY1 436 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM121Q9BTD3 319 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 SLC25A51Q9H1U9 297 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 GPN2Q9H9Y4 310 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 POLD4Q9HCU8 107 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 UTP6Q9NYH9 597 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 NINJ2Q9NZG7 142 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 CUX2O14529 1486 aa3.13□□□□□ -1.91
SMCHD1-204ENST00000581226 FAM230AA0A1W2PPH8 454 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 TOM1L1O75674 476 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 ANXA3P12429 323 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 BCKDHAP12694 445 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 MGMTP16455 207 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 XRCC1P18887 633 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 RIPK4P57078 832 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 RPL8P62917 257 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 VLDLRP98155 873 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 SPP2Q13103 211 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 DPYSL3Q14195 570 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 RAET1GQ6H3X3 334 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 OR8G2PQ6IF36 304 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 CXCL17Q6UXB2 119 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 TMEM184AQ6ZMB5 413 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 RBM43Q6ZSC3 357 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 EFCAB13Q8IY85 973 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 CERS5Q8N5B7 392 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 ZSCAN4Q8NAM6 433 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 OR9A4Q8NGU2 314 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 TRUB1Q8WWH5 349 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 IMMP1LQ96LU5 166 aa3.12□□□□□ -1.91
SMCHD1-204ENST00000581226 VSTM2LQ96N03 204 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms