RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LAMP1P11279 417 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 G6PDP11413 515 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 HPGDP15428 266 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 BMP7P18075 431 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 LBPP18428 481 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 EFNA1P20827 205 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 ATP6V1C1P21283 382 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 DPP4P27487 766 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 SOAT1P35610 550 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 FRKP42685 505 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 CLDN8P56748 225 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 MAGOHP61326 146 aaKnown RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 BST1Q10588 318 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 STX5Q13190 355 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 TP53BP2Q13625 1128 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 PGS1Q32NB8 556 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 ACSF3Q4G176 576 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 BEND6Q5SZJ8 279 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 RIPPLY2Q5TAB7 128 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 CHMP1BQ7LBR1 199 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 GDF7Q7Z4P5 450 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 WDR53Q7Z5U6 358 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 LACC1Q8IV20 430 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 CCDC71Q8IV32 467 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 MCEMP1Q8IX19 187 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 LRRC34Q8IZ02 419 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 Q8N3U1 123 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 RPRMLQ8N4K4 120 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 MARVELD2Q8N4S9 558 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 WDSUB1Q8N9V3 476 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 VPS37AQ8NEZ2 397 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 OR7A2PQ8NGA2 310 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 LILRB4Q8NHJ6 448 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 FBXO30Q8TB52 745 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 RAB3IL1Q8TBN0 382 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 PIK3R3Q92569 461 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 MOAP1Q96BY2 351 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 FAM120BQ96EK7 910 aaKnown RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 TRIB1Q96RU8 372 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 TIMP4Q99727 224 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 G6PC3Q9BUM1 346 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 DUSP26Q9BV47 211 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 UGT2B28Q9BY64 529 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 NUF2Q9BZD4 464 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 DPY30Q9C005 99 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 BHLHE41Q9C0J9 482 aaPredicted RBP7.37□□□□□ -1.23
VPS53-214ENST00000572607 OR2B2Q9GZK3 357 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 PRDM14Q9GZV8 571 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 AKTIPQ9H8T0 292 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 THAP1Q9NVV9 213 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 ASIC5Q9NY37 505 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 PCDHGB4Q9UN71 923 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 FAM215AQ9Y5M1 114 aa7.37□□□□□ -1.23
VPS53-214ENST00000572607 PKDREJQ9NTG1 2253 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 GXYLT2A0PJZ3 443 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 TRPC5OSA6NMA1 111 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 SLCO1B7G3V0H7 640 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 SCDO00767 359 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 DVL2O14641 736 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 UTS2O95399 124 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 C6orf47O95873 294 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 EPPINO95925 133 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 HK1P19367 917 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 LCN1P31025 176 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 CCT3P49368 545 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 SLC18A1P54219 525 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 DSCR4P56555 118 aaPredicted RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 EEFSECP57772 596 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 C21orf58P58505 322 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 POU6F2P78424 691 aaPredicted RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 C17orf67Q0P5P2 114 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 MPP2Q14168 576 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 GANABQ14697 944 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 CASP8Q14790 479 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 LASP1Q14847 261 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 SLC25A35Q3KQZ1 300 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 RAET1LQ5VY80 246 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 VASNQ6EMK4 673 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 RTL6Q6ICC9 239 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 OR5M10Q6IEU7 315 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 MFSD12Q6NUT3 480 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 MEX3BQ6ZN04 569 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 KRTCAP2Q8N6L1 136 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 SFXN5Q8TD22 340 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 ADAMTS15Q8TE58 950 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 STACQ99469 402 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 SORT1Q99523 831 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 YIPF4Q9BSR8 244 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 DSN1Q9H410 356 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 TMBIM4Q9HC24 238 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 NTMQ9P121 344 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 HAO1Q9UJM8 370 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 FBXL2Q9UKC9 423 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 RPH3AQ9Y2J0 694 aaPredicted RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 MRPS18CQ9Y3D5 142 aaKnown RBP7.36□□□□□ -1.23
VPS53-214ENST00000572607 MTORP42345 2549 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 MYO7BQ6PIF6 2116 aa7.36□□□□□ -1.23
VPS53-214ENST00000572607 CCDC168Q8NDH2 2452 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 A0A0G2JNJ9 132 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms