RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KLHL26Q53HC5 615 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PRAMEF20Q5VT98 475 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 IRAK1BP1Q5VVH5 260 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 BNC2Q6ZN30 1099 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 LRRC74BQ6ZQY2 392 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 HMGN2P46Q86SG4 172 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 SERPINA11Q86U17 422 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 DND1Q8IYX4 353 aaKnown RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 PGAM4Q8N0Y7 254 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 TMEM156Q8N614 296 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 WDSUB1Q8N9V3 476 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PCYOX1LQ8NBM8 494 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 FAM13CQ8NE31 585 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 FAM71CQ8NEG0 241 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 OR5M3Q8NGP4 307 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 OR10A6Q8NH74 314 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 TMEM19Q96HH6 336 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 SGCZQ96LD1 299 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 SECISBP2Q96T21 854 aaKnown RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 BARD1Q99728 777 aaKnown RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 TREX2Q9BQ50 279 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 WFDC6Q9BQY6 131 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 MFRPQ9BY79 579 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 SLC25A18Q9H1K4 315 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 GALNT9Q9HCQ5 603 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 BCL2L10Q9HD36 194 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 HPF1Q9NWY4 346 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 TUBA8Q9NY65 449 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 PACSIN3Q9UKS6 424 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 MKLN1Q9UL63 735 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 OR10H1Q9Y4A9 318 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 HELZ2Q9BYK8 2649 aaKnown RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 IGLV3-32A0A0A0MS00 114 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 C2orf72A6NCS6 295 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PRAMEF25A6NGN4 478 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 AGAP5A6NIR3 686 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 DUXAA6NLW8 204 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 CLDN24A6NM45 220 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 B2RBV5 119 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 ALG1L2C9J202 215 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PGM3O95394 542 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 AK1P00568 194 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 BCHEP06276 602 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 RFPL3SP0C7P2 107 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 CALB2P22676 271 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 LCN1P31025 176 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 EVI2BP34910 448 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PCGF2P35227 344 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 DCTP40126 519 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 DNASE1L1P49184 302 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 RNF144AP50876 292 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 NRG3P56975 720 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 GPR85P60893 370 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PMP22Q01453 160 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 OC90Q02509 493 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 ZNF169Q14929 603 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 SOWAHCQ53LP3 525 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 PRR30Q53SZ7 412 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 ZNF766Q5HY98 468 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 GCNT6Q5T4J0 391 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 ZNF324BQ6AW86 544 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 SLC25A25Q6KCM7 469 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PGM2L1Q6PCE3 622 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 ANGPTL8Q6UXH0 198 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 GALNTL5Q7Z4T8 443 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 MARCH3Q86UD3 253 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 HPS6Q86YV9 775 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 SIAH3Q8IW03 269 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 SULF2Q8IWU5 870 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 ZFP62Q8NB50 900 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 NFKBIDQ8NI38 313 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PNPLA2Q96AD5 504 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 ARSGQ96EG1 525 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 UBL7Q96S82 380 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 HOPXQ9BPY8 73 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 UBQLN3Q9H347 655 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 PIF1Q9H611 641 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 KLHL1Q9NR64 748 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 POLE3Q9NRF9 147 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 GID8Q9NWU2 228 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 LUZP4Q9P127 313 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 RALYQ9UKM9 306 aaKnown RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 LIPT1Q9Y234 373 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 B3GNT3Q9Y2A9 372 aa8.49□□□□□ -1.05
VPS35-211ENST00000569950 USP9XQ93008 2570 aaPredicted RBP8.49□□□□□ -1.05
VPS35-211ENST00000569950 TENM4Q6N022 2769 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 TRAV17A0A0B4J275 112 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 A0A1W2PQD3 144 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 EVPLLA8MZ36 301 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 FAM220BPB1ANY3 271 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 TPST1O60507 370 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 DPM1O60762 260 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 DNAJA2O60884 412 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 STX11O75558 287 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 SOX30O94993 753 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 AGR2O95994 175 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 ESRRAP11474 423 aaPredicted RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 HSD17B1P14061 328 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 CD247P20963 164 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 RFX3P48380 749 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms