RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SNRPBP14678 240 aaKnown RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 NDUFV2P19404 249 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 HLA-DMAP28067 261 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 LYPD4Q6UWN0 246 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 PRSS45Q7RTY3 260 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 OR4Q3Q8NH05 313 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 ZNF514Q96K75 400 aaPredicted RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 CAMK1GQ96NX5 476 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 PCDHGB7Q9Y5F8 929 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 TRDV1A0A1B0GX56 115 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ARRDC5A6NEK1 342 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 KLHL18O94889 574 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 EIF4EP06730 217 aaKnown RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 POU3F3P20264 500 aaPredicted RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 DNASE1P24855 282 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 MPIP34949 423 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 LHX8Q68G74 356 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 LCTLQ6UWM7 567 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ORAI1Q96D31 301 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 SLC41A3Q96GZ6 507 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 SENP5Q96HI0 755 aaPredicted RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 RNF170Q96K19 258 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ZSWIM3Q96MP5 696 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 OR7D2Q96RA2 312 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 LGR4Q9BXB1 951 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ATP13A2Q9NQ11 1180 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 TRIM36Q9NQ86 728 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 MRPL39Q9NYK5 338 aaKnown RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 LGI1O95970 557 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 HRGP04196 525 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 TRHRP34981 398 aaPredicted RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 TSPAN31Q12999 210 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 PGGHGQ32M88 737 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 SLC38A6Q8IZM9 456 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 SIRT6Q8N6T7 355 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ACOT4Q8N9L9 421 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 CEP76Q8TAP6 659 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 USP36Q9P275 1121 aaKnown RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 RGS9O75916 674 aaPredicted RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 ANXA3P12429 323 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 SIM1P81133 766 aaPredicted RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 DHCR24Q15392 516 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 C1orf94Q6P1W5 598 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 ZNF767PQ75MW2 155 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 FAM98AQ8NCA5 519 aaKnown RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 OR2T35Q8NGX2 323 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 MAN2C1Q9NTJ4 1040 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 AK6Q9Y3D8 172 aaKnown RBP13.56□□□□□ -0.24
VPS35-210ENST00000568784 CACNG2Q9Y698 323 aa13.56□□□□□ -0.24
VPS35-210ENST00000568784 FAM86C2PA6NEL3 165 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ADRB3P13945 408 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 HCCSP53701 268 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 CLDN20P56880 219 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SLC16A11Q8NCK7 471 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 OR2L2Q8NH16 312 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 FANK1Q8TC84 345 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 NDC1Q9BTX1 674 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 RNF32Q9H0A6 362 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 FZD3Q9NPG1 666 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS35-210ENST00000568784 DEC1Q9P2X7 70 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 TESQ9UGI8 421 aaKnown RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 SCN8AQ9UQD0 1980 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 LRRC72A6NJI9 287 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 HIDE1A8MVS5 230 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 RFPL3O75679 317 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ENDOUP21128 410 aaKnown RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 GRPRP30550 384 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 PITPNBP48739 271 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ANGPT1Q15389 498 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 TP53I3Q53FA7 332 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 FIGNL1Q6PIW4 674 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ZNF655Q8N720 491 aaPredicted RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 NXPE3Q969Y0 559 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 GAL3ST1Q99999 423 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 EVA1BQ9NVM1 165 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 TRAV27A0A087WT01 109 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SLC9B1P1A6NJY1 282 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SLC19A2O60779 497 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SLC43A1O75387 559 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 HMGN1P05114 100 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ADH5P11766 374 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 CDK5Q00535 292 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SIGIRRQ6IA17 410 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ZC3H14Q6PJT7 736 aaKnown RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 ZNF793Q6ZN11 406 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 SFTPA1Q8IWL2 248 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 TMEFF1Q8IYR6 380 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 LINC00471Q8N535 108 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 OR5W2Q8NH69 310 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 CDS1Q92903 461 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 CD180Q99467 661 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 OR51J1Q9H342 316 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 C6orf106Q9H6K1 298 aaPredicted RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 NIPAL2Q9H841 368 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 PRKAG2Q9UGJ0 569 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 PLEKHM1Q9Y4G2 1056 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 RNF13O43567 381 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 AIFM1O95831 613 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ASGR2P07307 311 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms