RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MARCH3Q86UD3 253 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 SLC44A2Q8IWA5 706 aaPredicted RBP10.39□□□□□ -0.75
CLK3-222ENST00000568232 TEX9Q8N6V9 391 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 ABHD3Q8WU67 409 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 VSTM2LQ96N03 204 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 TMEM185BQ9H7F4 350 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 POPDC3Q9HBV1 291 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 SAYSD1Q9NPB0 183 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 TMEFF2Q9UIK5 374 aaPredicted RBP10.39□□□□□ -0.75
CLK3-222ENST00000568232 POU2F3Q9UKI9 436 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 VDAC3Q9Y277 283 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 TSC22D4Q9Y3Q8 395 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 PCDHA9Q9Y5H5 950 aa10.39□□□□□ -0.75
CLK3-222ENST00000568232 A0A0J9YW62 118 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 LRP5LA4QPB2 252 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 H0YIV9 168 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 ADAMDEC1O15204 470 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 PDLIM4P50479 330 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 SLC12A2P55011 1212 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 PHEXP78562 749 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 CARTPTQ16568 116 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 IQCCQ4KMZ1 466 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 TMEM201Q5SNT2 666 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 CCNYL2Q5T2Q4 361 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 LIPJQ5W064 366 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 HIST2H2BDQ6DRA6 164 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 SLC22A25Q6T423 547 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 EXOC3L1Q86VI1 746 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 WDR75Q8IWA0 830 aaKnown RBP10.38□□□□□ -0.75
CLK3-222ENST00000568232 OR2V1Q8NHB1 315 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 WDR20Q8TBZ3 569 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 ZFAND2BQ8WV99 257 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 KLHL29Q96CT2 875 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 TRIM44Q96DX7 344 aaPredicted RBP10.38□□□□□ -0.75
CLK3-222ENST00000568232 CNRIP1Q96F85 164 aaPredicted RBP10.38□□□□□ -0.75
CLK3-222ENST00000568232 ZNF681Q96N22 645 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 PIMREGQ9BSJ6 248 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 MCMBPQ9BTE3 642 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 MRPL1Q9BYD6 325 aaKnown RBP10.38□□□□□ -0.75
CLK3-222ENST00000568232 ALG9Q9H6U8 611 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 SDHAF3Q9NRP4 125 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 RNF11Q9Y3C5 154 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 VWFP04275 2813 aa10.38□□□□□ -0.75
CLK3-222ENST00000568232 GOLGA8QA0A0J9YX86 632 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 GOLGA8OA6NCC3 632 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 SUPT3HB4E1H0 165 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 GOLGA8NF8WBI6 632 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 GOLGA8RI6L899 631 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 UBXN8O00124 270 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 NDUFB5O43674 189 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 SUPT3HO75486 399 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 EDNRAP25101 427 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 IL2RGP31785 369 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 ATP6V0D1P61421 351 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 MGAT5Q09328 741 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 ZNF628Q5EBL2 1059 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 SH2D4BQ5SQS7 431 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 STEAP4Q687X5 459 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 HBMQ6B0K9 141 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 GTF2IRD2BQ6EKJ0 949 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 GTF2IRD2Q86UP8 949 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 CCDC116Q8IYX3 515 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 OSTF1Q92882 214 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 MUCL1Q96DR8 90 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 MS4A14Q96JA4 679 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 RHOJQ9H4E5 214 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 PAQR5Q9NXK6 330 aaPredicted RBP10.37□□□□□ -0.75
CLK3-222ENST00000568232 PRSS50Q9UI38 385 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 OR10H1Q9Y4A9 318 aa10.37□□□□□ -0.75
CLK3-222ENST00000568232 PCNX3Q9H6A9 2034 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 C1orf226A1L170 272 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 FAM157AC9JC47 383 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 NDUFS8O00217 210 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 FOXE1O00358 373 aaPredicted RBP10.36□□□□□ -0.75
CLK3-222ENST00000568232 SMAD9O15198 467 aaKnown RBP10.36□□□□□ -0.75
CLK3-222ENST00000568232 TMPRSS2O15393 492 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 ZNF23P17027 643 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 ALDH9A1P49189 494 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 SMCPP49901 116 aaPredicted RBP10.36□□□□□ -0.75
CLK3-222ENST00000568232 ZNF83P51522 516 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 MAPK12P53778 367 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 POU4F1Q01851 419 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 MIDNQ504T8 468 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 LCE2AQ5TA79 106 aaPredicted RBP10.36□□□□□ -0.75
CLK3-222ENST00000568232 APOOLQ6UXV4 268 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 RINLQ6ZS11 566 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 ESPNLQ6ZVH7 1005 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 ANKMY2Q8IV38 441 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 OR9A2Q8NGT5 310 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 RNF128Q8TEB7 428 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 UBTD2Q8WUN7 234 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 SLC9A6Q92581 669 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 TM4SF18Q96CE8 201 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 RADILQ96JH8 1075 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 UBXN10Q96LJ8 280 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 SERPINI1Q99574 410 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 SRXN1Q9BYN0 137 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 BPESC1Q9GZL8 116 aa10.36□□□□□ -0.75
CLK3-222ENST00000568232 METTL17Q9H7H0 456 aaPredicted RBP10.36□□□□□ -0.75
CLK3-222ENST00000568232 NUDT4Q9NZJ9 180 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms