RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 HACD2Q6Y1H2 254 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 TOM1L2Q6ZVM7 507 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 ADAMTSL2Q86TH1 951 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 LINC01551Q86U37 167 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 GPBP1Q86WP2 473 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 CHCHD4Q8N4Q1 142 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 TMEM185AQ8NFB2 350 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 OR52E1Q8NGJ3 308 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 PSMA8Q8TAA3 256 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 DCUN1D4Q92564 292 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 C18orf25Q96B23 403 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 TMEM101Q96IK0 257 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 SLC17A9Q9BYT1 436 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 FAM124BQ9H5Z6 455 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 PNO1Q9NRX1 252 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 DCAF13Q9NV06 445 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 MBD2Q9UBB5 411 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 LCMT1Q9UIC8 334 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 PRPF19Q9UMS4 504 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 PSG11Q9UQ72 335 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 DHX29Q7Z478 1369 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 RAD54L2Q9Y4B4 1467 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 A0A0U1RQG5 324 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 SMIM28A0A1B0GU29 152 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 USP27XA6NNY8 438 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 NME2P1O60361 137 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 RAMP1O60894 148 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 SUPT7LO94864 414 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 ABHD2P08910 425 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 CCNA2P20248 432 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 TMOD1P28289 359 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 HTR1EP28566 365 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 PRDX6P30041 224 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 CDH5P33151 784 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 KRT83P78385 493 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 EIF4EBP1Q13541 118 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 CFAP221Q4G0U5 840 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 AGKQ53H12 422 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 BEND6Q5SZJ8 279 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 CCDC91Q7Z6B0 441 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 YRDCQ86U90 279 aaKnown RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 DNAJA4Q8WW22 397 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 PHYHIPQ92561 330 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 CABS1Q96KC9 395 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 CHRDL1Q9BU40 450 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 NACA2Q9H009 215 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 ALDH8A1Q9H2A2 487 aaPredicted RBP1.69□□□□□ -2.14
VPS35-207ENST00000568191 ONECUT1Q9UBC0 465 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 FETUBQ9UGM5 382 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 IFT52Q9Y366 437 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 CDH10Q9Y6N8 788 aa1.69□□□□□ -2.14
VPS35-207ENST00000568191 H0YL77 283 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 NBR2O15453 112 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 STK17BO94768 372 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 IGHV4-34P06331 123 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 GNSP15586 552 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 VDAC1P21796 283 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 CCNCP24863 283 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 ADORA2BP29275 332 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 AKT2P31751 481 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 SSTP61278 116 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 RPS6P62753 249 aaKnown RBP1.68□□□□□ -2.14
VPS35-207ENST00000568191 PLOD1Q02809 727 aaPredicted RBP1.68□□□□□ -2.14
VPS35-207ENST00000568191 RPA4Q13156 261 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 CYBRD1Q53TN4 286 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 DLEU7Q6UYE1 221 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 IL34Q6ZMJ4 242 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 CCDC36Q8IYA8 594 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 SAXO1Q8IYX7 474 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 ARFGAP2Q8N6H7 521 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 C10orf53Q8N6V4 93 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 NEK11Q8NG66 645 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 CCDC51Q96ER9 411 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 TMEM80Q96HE8 168 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 TMEM245Q9H330 911 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 KAT8Q9H7Z6 458 aaKnown RBP1.68□□□□□ -2.14
VPS35-207ENST00000568191 NECAP2Q9NVZ3 263 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 DUS2Q9NX74 493 aaKnown RBP1.68□□□□□ -2.14
VPS35-207ENST00000568191 CYP39A1Q9NYL5 469 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 DCDC2Q9UHG0 476 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 DUSP12Q9UNI6 340 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 L3MBTL1Q9Y468 752 aa1.68□□□□□ -2.14
VPS35-207ENST00000568191 IGLV4-69A0A075B6H9 119 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 KIR2DL5BA0A0G2JN68 375 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 KIR2DL5BA0A0G2JPC4 375 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 SPRR5A0A1B0GTR4 108 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 A6NDX4 124 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 ANKRD63C9JTQ0 380 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 TIMP1P01033 207 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 CD55P08174 381 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 SLC35G4P0C7Q5 338 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 THRBP10828 461 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 ZNF823P16415 610 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 TSPAN8P19075 237 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 HPDP32754 393 aaPredicted RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 NUDT1P36639 197 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 LONP1P36776 959 aaKnown RBP1.67□□□□□ -2.14
VPS35-207ENST00000568191 BTDP43251 543 aa1.67□□□□□ -2.14
VPS35-207ENST00000568191 RPS10P46783 165 aaKnown RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms