RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 GLYR1Q49A26 553 aaPredicted RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 C20orf204Q6ZNR8 217 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 GGNQ86UU5 652 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 PIK3R3Q92569 461 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 GFM2Q969S9 779 aaKnown RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 C16orf45Q96MC5 204 aaPredicted RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 LMF2Q9BU23 707 aaKnown RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 TBL1XR1Q9BZK7 514 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 MYNNQ9NPC7 610 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 EQTNQ9NQ60 294 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 MRTO4Q9UKD2 239 aaKnown RBP15.14■□□□□ 0.01
CLN3-211ENST00000564091 VDAC3Q9Y277 283 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 AP4B1Q9Y6B7 739 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 EXPH5Q8NEV8 1989 aa15.14■□□□□ 0.01
CLN3-211ENST00000564091 HIVEP2P31629 2446 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 EIF1AYO14602 144 aaKnown RBP15.13■□□□□ 0.01
CLN3-211ENST00000564091 SLITRK5O94991 958 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 PYGBP11216 843 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 EIF1AXP47813 144 aaKnown RBP15.13■□□□□ 0.01
CLN3-211ENST00000564091 C17orf67Q0P5P2 114 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 TMEM44Q2T9K0 475 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 GRAMD1BQ3KR37 738 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 ZNF551Q7Z340 670 aaPredicted RBP15.13■□□□□ 0.01
CLN3-211ENST00000564091 GALNT10Q86SR1 603 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 EXOC3L1Q86VI1 746 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 LCA5Q86VQ0 697 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 EGLN2Q96KS0 407 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 BDH2Q9BUT1 245 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 PRRG4Q9BZD6 226 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 ZANQ9Y493 2812 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 MED12LQ86YW9 2145 aa15.13■□□□□ 0.01
CLN3-211ENST00000564091 UQCRHLA0A096LP55 91 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 IGLV3-32A0A0A0MS00 114 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.12■□□□□ 0.01
CLN3-211ENST00000564091 KIAA1324LA8MWY0 1029 aaPredicted RBP15.12■□□□□ 0.01
CLN3-211ENST00000564091 KLF4O43474 513 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 ABHD2P08910 425 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 FCGR2AP12318 317 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 PTH2RP49190 550 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 PSMD4P55036 377 aaKnown RBP15.12■□□□□ 0.01
CLN3-211ENST00000564091 PRR5P85299 388 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLN3-211ENST00000564091 ANKRD26P1Q6NSI1 321 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 NOXRED1Q6NXP6 359 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 TRIM46Q7Z4K8 759 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 SLC9A6Q92581 669 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 NPAS1Q99742 590 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 C3orf14Q9HBI5 128 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 TNFRSF12AQ9NP84 129 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 EMCNQ9ULC0 261 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 WBP11Q9Y2W2 641 aaKnown RBP15.12■□□□□ 0.01
CLN3-211ENST00000564091 EMC9Q9Y3B6 208 aa15.12■□□□□ 0.01
CLN3-211ENST00000564091 G3V2L1 256 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 CRCPO75575 148 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 KCNH1O95259 989 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 PLGP00747 810 aaPredicted RBP15.11■□□□□ 0.01
CLN3-211ENST00000564091 PLAUP00749 431 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 PRKAG1P54619 331 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 OCRLQ01968 901 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 HSPB3Q12988 150 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 BEX5Q5H9J7 111 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 PLEKHM3Q6ZWE6 761 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 GATSQ8NAP1 163 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 OR6K3Q8NGY3 331 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 OR4C3Q8NH37 302 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 OR10D3Q8NH80 312 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 FAM76AQ8TAV0 307 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 GPR151Q8TDV0 419 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 CAVIN3Q969G5 261 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 MDFIQ99750 246 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 GSX2Q9BZM3 304 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 PLSCR4Q9NRQ2 329 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 TBK1Q9UHD2 729 aa15.11■□□□□ 0.01
CLN3-211ENST00000564091 INAFM1C9JVW0 142 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 RIPK2O43353 540 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 CXCL13O43927 109 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 RSL1D1O76021 490 aaKnown RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 CNOT4O95628 575 aaKnown RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 PRPS2P11908 318 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 CTBP2P56545 445 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 ZYG11AQ6WRX3 759 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 STAC2Q6ZMT1 411 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 ZNF704Q6ZNC4 412 aaPredicted RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 SH2D5Q6ZV89 423 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 IKBIPQ70UQ0 350 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 WDR75Q8IWA0 830 aaKnown RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 FBXO30Q8TB52 745 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 ACMSDQ8TDX5 336 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 MZB1Q8WU39 189 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 CIDECQ96AQ7 238 aaPredicted RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 ADGRG7Q96K78 797 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 KLHDC3Q9BQ90 382 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 TMEM185BQ9H7F4 350 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 RRAGDQ9NQL2 400 aaPredicted RBP15.1■□□□□ 0.01
CLN3-211ENST00000564091 PTGDR2Q9Y5Y4 395 aa15.1■□□□□ 0.01
CLN3-211ENST00000564091 A0A1W2PPM1 405 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 ALG1L2C9J202 215 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 NDUFB5O43674 189 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 SS18L1O75177 396 aaPredicted RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 SEC22BO75396 215 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms