RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 AIG1Q9NVV5 245 aa12.19□□□□□ -0.46
CLK3-213ENST00000563842 TAS2R10Q9NYW0 307 aa12.19□□□□□ -0.46
CLK3-213ENST00000563842 TNFRSF10DQ9UBN6 386 aa12.19□□□□□ -0.46
CLK3-213ENST00000563842 SLC6A5Q9Y345 797 aa12.19□□□□□ -0.46
CLK3-213ENST00000563842 GOLGA8QA0A0J9YX86 632 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 GOLGA8OA6NCC3 632 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 GOLGA8NF8WBI6 632 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 SCDO00767 359 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 ANKRD28O15084 1053 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 TGDSO95455 350 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 IDO1P14902 403 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 BMP7P18075 431 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 TBXA2RP21731 343 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 DPP4P27487 766 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 PPP2R2AP63151 447 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 RCAN2Q14206 197 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 GSTA3Q16772 222 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 EXOSC6Q5RKV6 272 aaKnown RBP12.18□□□□□ -0.46
CLK3-213ENST00000563842 OR5M10Q6IEU7 315 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 NCCRP1Q6ZVX7 275 aaPredicted RBP12.18□□□□□ -0.46
CLK3-213ENST00000563842 MED12LQ86YW9 2145 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 MISPQ8IVT2 679 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 FADS6Q8N9I5 356 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 OR4A15Q8NGL6 344 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 FBXO30Q8TB52 745 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 NUDT8Q8WV74 236 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 UGT2B28Q9BY64 529 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 HOXD1Q9GZZ0 328 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 WDR55Q9H6Y2 383 aaPredicted RBP12.18□□□□□ -0.46
CLK3-213ENST00000563842 UBQLN4Q9NRR5 601 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 INTS9Q9NV88 658 aaKnown RBP12.18□□□□□ -0.46
CLK3-213ENST00000563842 FBXL2Q9UKC9 423 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 CAMK2AQ9UQM7 478 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 RNF6Q9Y252 685 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 FAM215AQ9Y5M1 114 aa12.18□□□□□ -0.46
CLK3-213ENST00000563842 RNF103-CHMP3A0A140T963 221 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 ALG1L2C9J202 215 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 LINC01387J3KSC0 135 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 HNRNPRO43390 633 aaKnown RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 NDUFB5O43674 189 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 OXSR1O95747 527 aaPredicted RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 ANGPTL1O95841 491 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 EPPINO95925 133 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 AGR2O95994 175 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 AK1P00568 194 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 IGKV1D-16P01601 117 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 ALDOCP09972 364 aaKnown RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 GLI4P10075 376 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 CPN1P15169 458 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 MATN1P21941 496 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 UQCRC2P22695 453 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 CHMP24386 653 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 COL8A1P27658 744 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 MSX1P28360 303 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 DCTP40126 519 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 ZFP36L2P47974 494 aaKnown RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 WNT3P56703 355 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 STX5Q13190 355 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 GRAMD1BQ3KR37 738 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 FAM174BQ3ZCQ3 159 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 GLYR1Q49A26 553 aaPredicted RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 SPANXN4Q5MJ08 99 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 RIPPLY2Q5TAB7 128 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 FIGNL1Q6PIW4 674 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 C6orf120Q7Z4R8 191 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 MARCH3Q86UD3 253 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 LACC1Q8IV20 430 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 MARVELD2Q8N4S9 558 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 TRIML2Q8N7C3 387 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 ZNF527Q8NB42 609 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 OR2M3Q8NG83 312 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 OR5AK3PQ8NH89 298 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 LILRB4Q8NHJ6 448 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 GOT1L1Q8NHS2 421 aaPredicted RBP12.17□□□□□ -0.46
CLK3-213ENST00000563842 DUSP19Q8WTR2 217 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 CDS1Q92903 461 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 SLC35G5Q96KT7 338 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 SFXN2Q96NB2 322 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 DSN1Q9H410 356 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 EXD2Q9NVH0 621 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 GPATCH2Q9NW75 528 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 STOML1Q9UBI4 398 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 BTNL2Q9UIR0 455 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 GPR45Q9Y5Y3 372 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 USH1CQ9Y6N9 552 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 CENPEQ02224 2701 aa12.17□□□□□ -0.46
CLK3-213ENST00000563842 HEATR5AQ86XA9 2040 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 IGLV3-32A0A0A0MS00 114 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 A0A1W2PQD3 144 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 HSPB2A8KAH6 182 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 H3BNH8 94 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 UBDO15205 165 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 SCN2BO60939 215 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 SLC22A3O75751 556 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 CPSF4O95639 269 aaKnown RBP12.16□□□□□ -0.46
CLK3-213ENST00000563842 IL6P05231 212 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 HK1P19367 917 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 GFRA1P56159 465 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 UFM1P61960 85 aa12.16□□□□□ -0.46
CLK3-213ENST00000563842 HSPB2Q16082 182 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms