RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 HOXB9P17482 250 aaPredicted RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 GGT1P19440 569 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 GABRA3P34903 492 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PCGF2P35227 344 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PTGER4P35408 488 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 CA7P43166 264 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 NRG3P56975 720 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 RPS26P62854 115 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 ELF3P78545 371 aaPredicted RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 DUSP2Q05923 314 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 FUT7Q11130 342 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 KPNB1Q14974 876 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 EXOSC7Q15024 291 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 EXT1Q16394 746 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 FAM98BQ52LJ0 330 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 COX20Q5RI15 118 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PRAMEF8Q5VWM4 474 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PRAMEF7Q5VXH5 474 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 CYP2R1Q6VVX0 501 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 SPPL2CQ8IUH8 684 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 LGI4Q8N135 537 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 HORMAD2Q8N7B1 307 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 COX18Q8N8Q8 333 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 FAM156AQ8NDB6 213 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 BBS10Q8TAM1 723 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 SLC2A12Q8TD20 617 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PTPMT1Q8WUK0 201 aaPredicted RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 HAS2Q92819 552 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 PMM1Q92871 262 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 UTP4Q969X6 686 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 VMP1Q96GC9 406 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 C16orf58Q96GQ5 468 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 TRNT1Q96Q11 434 aaKnown RBP10.87□□□□□ -0.67
LDLR-212ENST00000560467 OR7D2Q96RA2 312 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 IKZF5Q9H5V7 419 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 DUSP22Q9NRW4 184 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 GPATCH2Q9NW75 528 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 ABI3Q9P2A4 366 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 SEC14L3Q9UDX4 400 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 ERVK-11Q9UQG0 969 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 IGHV1-45A0A0A0MS14 117 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 A0A0G2JPF8 293 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 C2orf92A0A1B0GVN3 265 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 A0A1W2PS29 197 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 SAGE2PA6NJ88 616 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 HNRNPCL2B2RXH8 293 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 HNRNPCL3B7ZW38 293 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 HS6ST1O60243 411 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 ZNF682O95780 498 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 GPIP06744 558 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 HNRNPCL4P0DMR1 293 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 ITGAMP11215 1152 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 KDELR2P33947 212 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 PTGER1P34995 402 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 CLCN2P51788 898 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 EFNA3P52797 238 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 POU6F2P78424 691 aaPredicted RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 MRPS22P82650 360 aaKnown RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 ADORA2A-AS1P86434 159 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 MGAT2Q10469 447 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 DECR1Q16698 335 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 LRRC23Q53EV4 343 aaPredicted RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 LCN8Q6JVE9 175 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 AAGABQ6PD74 315 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 PAPD4Q6PIY7 484 aaKnown RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 TMEM205Q6UW68 189 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 RPTNQ6XPR3 784 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 HSDL2Q6YN16 418 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 FKBP9P1Q75LS8 142 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 ZZZ3Q8IYH5 903 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 ZNF295-AS1Q8N0V1 137 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 B3GNT7Q8NFL0 401 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 NFKBIDQ8NI38 313 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 SPPL2AQ8TCT8 520 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 RAB8BQ92930 207 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 BTBD2Q9BX70 525 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 RASSF4Q9H2L5 321 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 DENND2DQ9H6A0 471 aaPredicted RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 MTHFD2LQ9H903 347 aaPredicted RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 CHST11Q9NPF2 352 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 POLE3Q9NRF9 147 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 RYDENQ9NUL5 291 aaKnown RBP10.86□□□□□ -0.67
LDLR-212ENST00000560467 ZNF639Q9UID6 485 aa10.86□□□□□ -0.67
LDLR-212ENST00000560467 SCN3AQ9NY46 2000 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 NUP210LQ5VU65 1888 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 A0A1W2PQ72 361 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 C19orf84I3L1E1 186 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 HMGN4O00479 90 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 ACOT8O14734 319 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 STX11O75558 287 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 ZFAND5O76080 213 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 RASAL1O95294 804 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 CBX7O95931 251 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 CRYABP02511 175 aaKnown RBP10.85□□□□□ -0.67
LDLR-212ENST00000560467 BCHEP06276 602 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 TFPTP0C1Z6 253 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 CT62P0C5K7 136 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 ARAFP10398 606 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 HPGDP15428 266 aa10.85□□□□□ -0.67
LDLR-212ENST00000560467 NCK1P16333 377 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms