RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 A0A087WZY1 265 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 IGLV3-32A0A0A0MS00 114 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 KIAA1324LA8MWY0 1029 aaPredicted RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 B4DXG7 233 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 H3BQF6 201 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 EIF1AYO14602 144 aaKnown RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 KLF4O43474 513 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 NDUFB5O43674 189 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 AQP8O94778 261 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 UTS2O95399 124 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 SYNGR4O95473 234 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 ANGPTL1O95841 491 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 IFI6P09912 130 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 PABPC4LP0CB38 370 aaKnown RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CTAGE8P0CG41 777 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CCKARP32238 428 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 PRKAA2P54646 552 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 ATP5J2P56134 94 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 NAA20P61599 178 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 GUSBP1Q15486 140 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 VPS26BQ4G0F5 336 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 PDSS1Q5T2R2 415 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 TMEM107Q6UX40 140 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 ZNF704Q6ZNC4 412 aaPredicted RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 EXOC3L1Q86VI1 746 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CTAGE4Q8IX94 777 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 ZNF611Q8N823 705 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CEP70Q8NHQ1 597 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 SPATA3Q8NHX4 192 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CDC26Q8NHZ8 85 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CCDC126Q96EE4 140 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 L3HYPDHQ96EM0 354 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 TMEM237Q96Q45 408 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 LMF2Q9BU23 707 aaKnown RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 HDHD5Q9BXW7 423 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 GLIPR2Q9H4G4 154 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 MID1IP1Q9NPA3 183 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 RRAGDQ9NQL2 400 aaPredicted RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 ZNF701Q9NV72 531 aaPredicted RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 FN1P02751 2386 aaKnown RBP8.23□□□□□ -1.09
HDDC3-204ENST00000559834 CSPG4Q6UVK1 2322 aa8.23□□□□□ -1.09
HDDC3-204ENST00000559834 EXOC1LA0A1B0GW35 172 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 C17orf51A8MQB3 221 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 INAFM1C9JVW0 142 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 HS3ST1O14792 307 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 CRCPO75575 148 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 PSMG1O95456 288 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 THBDP07204 575 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 GSTA1P08263 222 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 PRPS2P11908 318 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 HPGDP15428 266 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ZNF17P17021 662 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ME2P23368 584 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 LOXP28300 417 aaPredicted RBP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 GPC1P35052 558 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 HTR6P50406 440 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 RAC1P63000 192 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 TMEM44Q2T9K0 475 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 UBAP2Q5T6F2 1119 aaKnown RBP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 CPTPQ5TA50 214 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 FAM71E1Q6IPT2 247 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 STAC2Q6ZMT1 411 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 C22orf34Q6ZV56 151 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ESPNLQ6ZVH7 1005 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 IKBIPQ70UQ0 350 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 STEAP2Q8NFT2 490 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 OR10D3Q8NH80 312 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 GPR151Q8TDV0 419 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ACMSDQ8TDX5 336 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ACTRT2Q8TDY3 377 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ZBTB8AQ96BR9 441 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 TRMT61AQ96FX7 289 aaKnown RBP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 PLPPR2Q96GM1 343 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 REXO5Q96IC2 774 aaKnown RBP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 METTL2AQ96IZ6 378 aaKnown RBP8.22□□□□□ -1.09
HDDC3-204ENST00000559834 AMDHD1Q96NU7 426 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 MDFIQ99750 246 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 RTN4RQ9BZR6 473 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 MYNNQ9NPC7 610 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 NGBQ9NPG2 151 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 TIGARQ9NQ88 270 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 FLRT3Q9NZU0 649 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 DCDC2Q9UHG0 476 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 VDAC3Q9Y277 283 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 SNX8Q9Y5X2 465 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 JMJD1CQ15652 2540 aa8.22□□□□□ -1.09
HDDC3-204ENST00000559834 ALG1L2C9J202 215 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 ADAMDEC1O15204 470 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 GMFGO60234 142 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 SS18L1O75177 396 aaPredicted RBP8.21□□□□□ -1.1
HDDC3-204ENST00000559834 RSL1D1O76021 490 aaKnown RBP8.21□□□□□ -1.1
HDDC3-204ENST00000559834 URI1O94763 535 aaPredicted RBP8.21□□□□□ -1.1
HDDC3-204ENST00000559834 FESP07332 822 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 TUBBP07437 444 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 NGFRP08138 427 aa8.21□□□□□ -1.1
HDDC3-204ENST00000559834 PSMB1P20618 241 aaKnown RBP8.21□□□□□ -1.1
HDDC3-204ENST00000559834 LCN1P31025 176 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms