RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PINX1Q96BK5 328 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 ZNF689Q96CS4 500 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 AKR1E2Q96JD6 320 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ELMO2Q96JJ3 720 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 LINC00479Q96M42 142 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PSKH2Q96QS6 385 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 MCCC1Q96RQ3 725 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 RANBP9Q96S59 729 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SECISBP2Q96T21 854 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 GPA33Q99795 319 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ATF6BQ99941 703 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SOSTQ9BQB4 213 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 MCRIP2Q9BUT9 160 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 TRIM9Q9C026 710 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 POLR1EQ9GZS1 481 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 GFRA4Q9GZZ7 299 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 POLR3FQ9H1D9 316 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 TUBB1Q9H4B7 451 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 HEXA-AS1Q9H8Q6 139 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ABCC13Q9NSE7 274 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ZDHHC18Q9NUE0 388 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 DHRS4-AS1Q9P1J3 65 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 PTBP2Q9UKA9 531 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 BARX2Q9UMQ3 279 aaPredicted RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 CLEC4AQ9UMR7 237 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 SMC3Q9UQE7 1217 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 RNF24Q9Y225 148 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 MRPS33Q9Y291 106 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 GSTK1Q9Y2Q3 226 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 RRP15Q9Y3B9 282 aaKnown RBP1.3□□□□□ -2.2
USP3-209ENST00000558925 ASB3Q9Y575 518 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 USP16Q9Y5T5 823 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 ATP10DQ9P241 1426 aa1.3□□□□□ -2.2
USP3-209ENST00000558925 IGHV3OR16-12A0A075B7B8 117 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PPIAL4CA0A0B4J2A2 164 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 A0A0J9YWU9 116 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 A0A1W2PPR1 153 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ZNF840PA6NDX5 716 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 FRG2CA6NGY1 282 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SAGE2PA6NJ88 616 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TRIM64CA6NLI5 447 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 G3V4G9 280 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CLDN5O00501 218 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 FCN1O00602 326 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CXCL11O14625 94 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 MAGEB3O15480 346 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TYROBPO43914 113 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CRLF1O75462 422 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 IDH1O75874 414 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 MFN2O95140 757 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ANP32DO95626 131 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 IL1BP01584 269 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PIGRP01833 764 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 OPN1LWP04000 364 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SERPINB2P05120 415 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 HOXD4P09016 255 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 ALOX5P09917 674 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TRIM49P0CI25 452 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TRIM49CP0CI26 452 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PPIAL4GP0DN37 164 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PVRP15151 417 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 NCK1P16333 377 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SDC1P18827 310 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TPSB2P20231 275 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TBXA2RP21731 343 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 LAP3P28838 519 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PBLDP30039 288 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 CHI3L1P36222 383 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 OR1D4P47884 311 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ARHGDIBP52566 201 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PLA2G16P53816 162 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ERVPABLB-1P60509 514 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 OSTNP61366 133 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 RPL8P62917 257 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 CBX1P83916 185 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SPIBQ01892 262 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 RGS1Q08116 209 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ST3GAL3Q11203 375 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 COX10Q12887 443 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ELAVL2Q12926 359 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 IL18R1Q13478 541 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CUL1Q13616 776 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 DPYSL3Q14195 570 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ELAVL3Q14576 367 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 ATXN7L3Q14CW9 347 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 TPSAB1Q15661 275 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SLC5A12Q1EHB4 618 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CNPY1Q3B7I2 92 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TIGITQ495A1 244 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 GLIPR1L2Q4G1C9 344 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SLC22A6Q4U2R8 563 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CEP55Q53EZ4 464 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 VWA2Q5GFL6 755 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CEP85LQ5SZL2 805 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 WSCD1Q658N2 575 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ZNF57Q68EA5 555 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 STOX1Q6ZVD7 989 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ANKRD37Q7Z713 158 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TMEM110Q86TL2 294 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SLC25A42Q86VD7 318 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms