RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ID2Q02363 134 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 OC90Q02509 493 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 STX4Q12846 297 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 KEAP1Q14145 624 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 PGS1Q32NB8 556 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 TMEM35AQ53FP2 167 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 INTS11Q5TA45 600 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 DEPDC1Q5TB30 811 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 KHDRBS2Q5VWX1 349 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 OR4C11Q6IEV9 310 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 OR4F3Q6IEY1 312 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 PPP4R4Q6NUP7 873 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF793Q6ZN11 406 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF595Q8IYB9 648 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 MICU2Q8IYU8 434 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 METTL4Q8N3J2 472 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 SLC5A8Q8N695 610 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 FAM98AQ8NCA5 519 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 NFAM1Q8NET5 270 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ELP5Q8TE02 316 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 RGMAQ96B86 450 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 PPWD1Q96BP3 646 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 COQ8BQ96D53 544 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 CENPNQ96H22 339 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF597Q96LX8 424 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 PRPF18Q99633 342 aaKnown RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 INPP5KQ9BT40 448 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ALOXE3Q9BYJ1 711 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 DEFB126Q9BYW3 111 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ROGDIQ9GZN7 287 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 TP63Q9H3D4 680 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-230ENST00000557427 IKZF5Q9H5V7 419 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 COQ10BQ9H8M1 238 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 KCMF1Q9P0J7 381 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ATP6V1HQ9UI12 483 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 SCOCQ9UIL1 159 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 BTNL2Q9UIR0 455 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 CBLCQ9ULV8 474 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 MMACHCQ9Y4U1 282 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 GMEB1Q9Y692 573 aa11.5□□□□□ -0.57
SHMT2-230ENST00000557427 ELOVL7A1L3X0 281 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 A6NHS1 94 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 SAGE2PA6NJ88 616 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 H7C1Q1 480 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 RFXANKO14593 260 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 GSTA4O15217 222 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 PCDH7O60245 1069 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 LDB3O75112 727 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 LYNP07948 512 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 HIST1H1TP22492 207 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-230ENST00000557427 CPN2P22792 545 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 PTX3P26022 381 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-230ENST00000557427 SSR2P43308 183 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF763Q0D2J5 394 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 SLAMF1Q13291 335 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 ATP6AP1Q15904 470 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 GTDC1Q4AE62 458 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 ANXA8L1Q5VT79 327 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 DNAJC14Q6Y2X3 702 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-230ENST00000557427 FKBP9P1Q75LS8 142 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 AMIGO2Q86SJ2 522 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 OR4N5Q8IXE1 308 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 OR7A2PQ8NGA2 310 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 OR10A6Q8NH74 314 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 FAM120BQ96EK7 910 aaKnown RBP11.49□□□□□ -0.57
SHMT2-230ENST00000557427 C9orf16Q9BUW7 83 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 DUSP26Q9BV47 211 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 SEMA6AQ9H2E6 1030 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 YY1AP1Q9H869 796 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 PLEKHF2Q9H8W4 249 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 MYNNQ9NPC7 610 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 PLSCR2Q9NRY7 297 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 SLC6A13Q9NSD5 602 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 DNAJC13O75165 2243 aa11.49□□□□□ -0.57
SHMT2-230ENST00000557427 ANK3Q12955 4377 aaKnown RBP11.49□□□□□ -0.57
SHMT2-230ENST00000557427 TRBV11-1A0A0K0K1C0 115 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 RNF212BA8MTL3 300 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 EVPLLA8MZ36 301 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CXCR6O00574 342 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 HS6ST1O60243 411 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CDC40O60508 579 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SLC25A12O75746 678 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SMNDC1O75940 238 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 PDE9AO76083 593 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SEMA3DO95025 777 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 ZCCHC18P0CG32 403 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 RAP2AP10114 183 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CD53P19397 219 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 PPIBP23284 216 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 TPP2P29144 1249 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CDKN2CP42773 168 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 MLF1P58340 268 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 PDK3Q15120 406 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 FAM98BQ52LJ0 330 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CPTPQ5TA50 214 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SHEQ5VZ18 495 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 TMEM154Q6P9G4 183 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 R3HCC1LQ7Z5L2 792 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SERPINA11Q86U17 422 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 VPS37AQ8NEZ2 397 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms