RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 COL16A1Q07092 1604 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 H0Y9J4 135 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 ALOX15BO15296 676 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 NOL4O94818 638 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 NDUFA7O95182 113 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 HSPB1P04792 205 aaKnown RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 IGFBP1P08833 259 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 SLC35G4P0C7Q5 338 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 NCF1P14598 390 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 PRDX2P32119 198 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 MRPS6P82932 125 aaKnown RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 FUT7Q11130 342 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 RFTN1Q14699 578 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 LDLRAP1Q5SW96 308 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 BEND6Q5SZJ8 279 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 P4HA3Q7Z4N8 544 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 NET1Q7Z628 596 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 FRAT1Q92837 279 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 ADIPOR1Q96A54 375 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 C18orf25Q96B23 403 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 TRIM44Q96DX7 344 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 DTNBP1Q96EV8 351 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 WRAP53Q9BUR4 548 aaKnown RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 TSSK1BQ9BXA7 367 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 NACA2Q9H009 215 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 RWDD1Q9H446 243 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-221ENST00000556534 ANKMY1Q9P2S6 941 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 PLA2G4CQ9UP65 541 aa3.13□□□□□ -1.91
SCFD1-221ENST00000556534 METP08581 1390 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 B4DXG7 233 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 LANCL1O43813 399 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 NOL3O60936 208 aaKnown RBP3.12□□□□□ -1.91
SCFD1-221ENST00000556534 PGK1P00558 417 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 AK1P00568 194 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 JCHAINP01591 159 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 HSPA5P11021 654 aaKnown RBP3.12□□□□□ -1.91
SCFD1-221ENST00000556534 PTPN6P29350 595 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 EFNA3P52797 238 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 ARFIP1P53367 373 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 STX17P56962 302 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 GABPB1Q06547 395 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-221ENST00000556534 PRR4Q16378 134 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 CYBRD1Q53TN4 286 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 HSP90AA5PQ58FG0 334 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 SLC25A24Q6NUK1 477 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 GMCL1P1Q8NEA9 526 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 FAM71CQ8NEG0 241 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 OR52B4Q8NGK2 314 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 TECTBQ96PL2 329 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 ATG10Q9H0Y0 220 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 EHFQ9NZC4 300 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 GHRLQ9UBU3 117 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 DUSP12Q9UNI6 340 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 PDE10AQ9Y233 779 aa3.12□□□□□ -1.91
SCFD1-221ENST00000556534 TTC26A0AVF1 554 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 E9PMD0 336 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 H0YL77 283 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 SGK494L7N484 410 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 CHADO15335 359 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 ELP6Q0PNE2 266 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 PDZK1IP1Q13113 114 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 SCGB2A2Q13296 93 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 SNX1Q13596 522 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 PDIA5Q14554 519 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 CYP51A1Q16850 503 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 MOB1BQ7L9L4 216 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 TBC1D21Q8IYX1 336 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 NFAM1Q8NET5 270 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-221ENST00000556534 SELENOMQ8WWX9 145 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 ART4Q93070 314 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 RAB7BQ96AH8 199 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 SLC25A38Q96DW6 304 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 VPS39Q96JC1 886 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 MYCBPQ99417 103 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-221ENST00000556534 THUMPD2Q9BTF0 503 aaKnown RBP3.11□□□□□ -1.91
SCFD1-221ENST00000556534 TMEM231Q9H6L2 316 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 ISG20L2Q9H9L3 353 aaKnown RBP3.11□□□□□ -1.91
SCFD1-221ENST00000556534 GRIN2DO15399 1336 aa3.11□□□□□ -1.91
SCFD1-221ENST00000556534 LRRK1Q38SD2 2015 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 RNF222A6NCQ9 220 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 FAM231BA6NCW3 169 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 PPIHO43447 177 aaKnown RBP3.1□□□□□ -1.91
SCFD1-221ENST00000556534 SCGB2A1O75556 95 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 TSPY4P0CV99 314 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 TSPY10P0CW01 314 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 CCDC166P0CW27 439 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 NF2P35240 595 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 HTR5AP47898 357 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 TRPC1P48995 793 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 PLOD1Q02809 727 aaPredicted RBP3.1□□□□□ -1.91
SCFD1-221ENST00000556534 UBE2V2Q15819 145 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 SLC39A4Q6P5W5 647 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 BTNL3Q6UXE8 466 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 TFAP2EQ6VUC0 442 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 Q6ZVH6 145 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 ARMCX2Q7L311 632 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 PPP1R42Q7Z4L9 355 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 CADM2Q8N3J6 435 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 CSNK1A1LQ8N752 337 aa3.1□□□□□ -1.91
SCFD1-221ENST00000556534 C14orf178Q8N769 122 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms