RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CSNK2A2P19784 350 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 NT5EP21589 574 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 CHMP24386 653 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 TYK2P29597 1187 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 PPICP45877 212 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 CCNG1P51959 295 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 MAPK12P53778 367 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 RPL11P62913 178 aaKnown RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 TRA2BP62995 288 aaKnown RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 SRYQ05066 204 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 DMTNQ08495 405 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 C2orf54Q08AI8 447 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 FAM27E3Q08E93 113 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 GALNT1Q10472 559 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 RCAN2Q14206 197 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 GRAMD1BQ3KR37 738 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 CCNYL2Q5T2Q4 361 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 C6orf163Q5TEZ5 329 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 SCIMPQ6UWF3 145 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 PRSS57Q6UWY2 283 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 ZNF550Q7Z398 422 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 COMMD6Q7Z4G1 85 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 CCDC25Q86WR0 208 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 PTGR2Q8N8N7 351 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 WDSUB1Q8N9V3 476 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 OR1J4Q8NGS1 313 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 ZNF675Q8TD23 568 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 WFDC12Q8WWY7 111 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 TMEM158Q8WZ71 300 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 LCORQ96JN0 433 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 ZNF681Q96N22 645 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 G6PC3Q9BUM1 346 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 JAM3Q9BX67 310 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 MRPL1Q9BYD6 325 aaKnown RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 MS4A5Q9H3V2 200 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 NOP53Q9NZM5 478 aaKnown RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 PSME2Q9UL46 239 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 PYCARDQ9ULZ3 195 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 MRPS18CQ9Y3D5 142 aaKnown RBP9.05□□□□□ -0.96
SCFD1-220ENST00000556486 MED12LQ86YW9 2145 aa9.05□□□□□ -0.96
SCFD1-220ENST00000556486 C7orf72A4D263 438 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 FRG2CA6NGY1 282 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 MSTNO14793 375 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 CTIFO43310 598 aaKnown RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 UGT2B11O75310 529 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PROCP04070 461 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 AMY2AP04746 511 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 RPS17P08708 135 aaKnown RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 CYP4B1P13584 511 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 AMY2BP19961 511 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 NOS3P29474 1203 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PHBP35232 272 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 GCKP35557 465 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 EMDP50402 254 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 IFT88Q13099 833 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PDCD1Q15116 288 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 ENPP6Q6UWR7 440 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 ANGPTL8Q6UXH0 198 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 YRDCQ86U90 279 aaKnown RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 TSPYL5Q86VY4 417 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PLD6Q8N2A8 252 aaKnown RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 GBP7Q8N8V2 638 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 ATP6V1E2Q96A05 226 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 TM4SF18Q96CE8 201 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 OMA1Q96E52 524 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 DTNBP1Q96EV8 351 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 CNRIP1Q96F85 164 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 SLC35A4Q96G79 324 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 BTBD9Q96Q07 612 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 NODALQ96S42 347 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 TUBA1CQ9BQE3 449 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 OSBPL11Q9BXB4 747 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 ITPAQ9BY32 194 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 SHCBP1LQ9BZQ2 653 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PIGMQ9H3S5 423 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 ELOVL6Q9H5J4 265 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 METTL7AQ9H8H3 244 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 YAE1D1Q9NRH1 226 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 CPSF2Q9P2I0 782 aaKnown RBP9.04□□□□□ -0.96
SCFD1-220ENST00000556486 CLCF1Q9UBD9 225 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 PRODH2Q9UF12 536 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 NDRG3Q9UGV2 375 aa9.04□□□□□ -0.96
SCFD1-220ENST00000556486 USF3Q68DE3 2245 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PRAMEF25A6NGN4 478 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 HCRTR2O43614 444 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 BCAS2O75934 225 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 OTCP00480 354 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CRHP06850 196 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CT45A8P0DMV1 189 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CT45A9P0DMV2 189 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 HSD3B1P14060 373 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 FPR1P21462 350 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 TCEA1P23193 301 aaKnown RBP9.03□□□□□ -0.96
SCFD1-220ENST00000556486 SRD5A2P31213 254 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 LHX2P50458 406 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 HMGCS1Q01581 520 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 PLCXD2Q0VAA5 305 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 GAB1Q13480 694 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 VEZF1Q14119 521 aa9.03□□□□□ -0.96
SCFD1-220ENST00000556486 CAPRIN1Q14444 709 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms