RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 LINC01560Q8TB33 94 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 SMPDL3BQ92485 455 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 FIG4Q92562 907 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 ZBED6CLQ96FA7 236 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 ZNF764Q96H86 408 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 SH3YL1Q96HL8 342 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 MS4A4EQ96PG1 132 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 ZNF559Q9BR84 538 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 GPATCH1Q9BRR8 931 aaKnown RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 ZCCHC3Q9NUD5 404 aaKnown RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 RYDENQ9NUL5 291 aaKnown RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 FAM120CQ9NX05 1096 aaKnown RBP16.47■□□□□ 0.23
SHMT2-206ENST00000553529 VDAC3Q9Y277 283 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 TMED5Q9Y3A6 229 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 MYO9AB2RTY4 2548 aa16.47■□□□□ 0.23
SHMT2-206ENST00000553529 MED12LQ86YW9 2145 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 A0A1W2PRB8 838 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 EMC8O43402 210 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 IL2RAP01589 272 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 HMGN2P05204 90 aaKnown RBP16.46■□□□□ 0.23
SHMT2-206ENST00000553529 TMIGD3P0DMS9 266 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-206ENST00000553529 ABCE1P61221 599 aaKnown RBP16.46■□□□□ 0.23
SHMT2-206ENST00000553529 ZNHIT3Q15649 155 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-206ENST00000553529 LUZP2Q86TE4 346 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 RIMKLAQ8IXN7 391 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 OR5D16Q8NGK9 328 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 PPP1R14CQ8TAE6 165 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 ZPLD1Q8TCW7 415 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 C1GALT1C1Q96EU7 318 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 AKTIPQ9H8T0 292 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 KCNK9Q9NPC2 374 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 ACSS1Q9NUB1 689 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-206ENST00000553529 NTMQ9P121 344 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 CREBBPQ92793 2442 aa16.46■□□□□ 0.23
SHMT2-206ENST00000553529 OR2M5A3KFT3 312 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 SLITRK5O94991 958 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 SERPINE1P05121 402 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 IL11P20809 199 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 HPCAL1P37235 193 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 ASMTP46597 345 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 ASCL1P50553 236 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 DSCR4P56555 118 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-206ENST00000553529 WDR4P57081 412 aaKnown RBP16.45■□□□□ 0.22
SHMT2-206ENST00000553529 TP53BP2Q13625 1128 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 PGS1Q32NB8 556 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 OR4F3Q6IEY1 312 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 CDH24Q86UP0 819 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 CDRT4Q8N9R6 151 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 ZFP28Q8NHY6 868 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 FAM110BQ8TC76 370 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 MGARPQ8TDB4 240 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 CHMP6Q96FZ7 201 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 PAIP2Q9BPZ3 127 aaKnown RBP16.45■□□□□ 0.22
SHMT2-206ENST00000553529 TBL1XR1Q9BZK7 514 aa16.45■□□□□ 0.22
SHMT2-206ENST00000553529 CENPVL1A0A0U1RR11 272 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 ENO4A6NNW6 628 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 SYT5O00445 386 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 DVL2O14641 736 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 KCNH1O95259 989 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 CTSSP25774 331 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 SLC1A6P48664 564 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 NME5P56597 212 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 HBA1P69905 142 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 PHC1P78364 1004 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 PRR5P85299 388 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 RCAN2Q14206 197 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHMT2-206ENST00000553529 CPTPQ5TA50 214 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 VWA1Q6PCB0 445 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 ENPP6Q6UWR7 440 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 ANKRD46Q86W74 232 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 COX18Q8N8Q8 333 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 NUF2Q9BZD4 464 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 TMEM185BQ9H7F4 350 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 CALHM2Q9HA72 323 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 GPATCH2Q9NW75 528 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 ABCG2Q9UNQ0 655 aa16.44■□□□□ 0.22
SHMT2-206ENST00000553529 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 TMEM114B3SHH9 223 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 HCRTR2O43614 444 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 TNFSF13O75888 250 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 ALOX5P09917 674 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 SHC1P29353 583 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 SOAT1P35610 550 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 SERPINB5P36952 375 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 KIR2DL3P43628 341 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 SLC6A8P48029 635 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 SIRPAP78324 504 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 BST1Q10588 318 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 HMGN2P46Q86SG4 172 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 GRAMD2AQ8IUY3 354 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 POC1BQ8TC44 478 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 RNASE6Q93091 150 aaKnown RBP16.43■□□□□ 0.22
SHMT2-206ENST00000553529 COQ8BQ96D53 544 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 MTERF3Q96E29 417 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 TEX37Q96LM6 180 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 PINK1Q9BXM7 581 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 GALNT8Q9NY28 637 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 JKAMPQ9P055 326 aa16.43■□□□□ 0.22
SHMT2-206ENST00000553529 ZNF629Q9UEG4 869 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms