RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SYT6Q5T7P8 510 aaPredicted RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 YOD1Q5VVQ6 348 aaPredicted RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 C7orf57Q8NEG2 295 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 PIGXQ8TBF5 258 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 NAA50Q9GZZ1 169 aaKnown RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 LIN28AQ9H9Z2 209 aaKnown RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 NECTIN3Q9NQS3 549 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 CDHR4A6H8M9 788 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 PEX12O00623 359 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 LAMTOR5O43504 91 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 IGFBP1P08833 259 aaPredicted RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 MYF5P13349 255 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 HOXC5Q00444 222 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 TSPAN31Q12999 210 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 SQSTM1Q13501 440 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 TMEM201Q5SNT2 666 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 CASP12Q6UXS9 341 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 RRM2BQ7LG56 351 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 PRICKLE2Q7Z3G6 844 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 GPR135Q8IZ08 494 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 FCGR1BQ92637 280 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 GPA33Q99795 319 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 SLC6A14Q9UN76 642 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 MAU2Q9Y6X3 613 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 TNRC6BQ9UPQ9 1833 aaKnown RBP24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 HRKO00198 91 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 TOX3O15405 576 aaPredicted RBP24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 FOLR1P15328 257 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 TNNI3P19429 210 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 NR0B2Q15466 257 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 PLK5Q496M5 336 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 FLYWCH1Q4VC44 716 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 OR7G1Q8NGA0 311 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 Q96MT0 163 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 NDC1Q9BTX1 674 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 CNPPD1Q9BV87 410 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF768Q9H5H4 540 aaKnown RBP24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 CNOT2Q9NZN8 540 aaKnown RBP24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 WARS2Q9UGM6 360 aaKnown RBP24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 SERTAD3Q9UJW9 196 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 NTNG1Q9Y2I2 539 aa24.42■■□□□ 1.5
CCDC88C-205ENST00000553403 NPIPA5A0A0B4J1W7 369 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 TRAPPC13A5PLN9 417 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 EFCAB10A6NFE3 127 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 NPIPA7E9PJI5 369 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 M0R129 80 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 ATE1O95260 518 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 FADS2O95864 444 aaKnown RBP24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 THY1P04216 161 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 IFNA16P05015 189 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 NPIPA8P0DM63 369 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 OMPP47874 163 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 LSM11P83369 360 aaKnown RBP eCLIP24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 ZSWIM7Q19AV6 140 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 NKAIN4Q8IVV8 208 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 OR4C6Q8NH72 309 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 OR10A5Q9H207 317 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 GPN2Q9H9Y4 310 aaPredicted RBP24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 SLC25A19Q9HC21 320 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 Q9N2J8 555 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 PRODH2Q9UF12 536 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 TESQ9UGI8 421 aaKnown RBP24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 ERVK-19Q9WJR5 959 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF318Q5VUA4 2279 aa24.41■■□□□ 1.5
CCDC88C-205ENST00000553403 HYAL3O43820 417 aaPredicted RBP24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 ALAS2P22557 587 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 CDK5Q00535 292 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 DSG2Q14126 1118 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 UBE2UQ5VVX9 321 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 CCDC81Q6ZN84 652 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 RASSF6Q6ZTQ3 369 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 MBOAT2Q6ZWT7 520 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 ZAR1Q86SH2 424 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 ANKRD13BQ86YJ7 626 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF615Q8N8J6 731 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 OR8J1Q8NGP2 316 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 SAP25Q8TEE9 199 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 BCL7BQ9BQE9 202 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 FUNDC2Q9BWH2 189 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 CAPN10Q9HC96 672 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 C14orf105Q9NVL8 296 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 OR2W5A6NFC9 320 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 DSCR3O14972 297 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 YKT6O15498 198 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 DRD5P21918 477 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 STAT5AP42229 794 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 OR1D4P47884 311 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 NUDT6P53370 316 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 NUBP1P53384 320 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 TBCEQ15813 527 aaPredicted RBP24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 TMEM71Q6P5X7 295 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 NPSR1Q6W5P4 371 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 QSOX2Q6ZRP7 698 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 GATAD2AQ86YP4 633 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 PRSS33Q8NF86 280 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 PTCHD1Q96NR3 888 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 NUDT22Q9BRQ3 303 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 G6PC3Q9BUM1 346 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 IRF2BPLQ9H1B7 796 aa24.4■■□□□ 1.5
CCDC88C-205ENST00000553403 KRCC1Q9NPI7 259 aaPredicted RBP24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 308.7 ms