RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ADRM1	Q16186	407 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	VMAC	Q2NL98	169 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	INTS11	Q5TA45	600 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	BICRAL	Q6AI39	1079 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	TYW3	Q6IPR3	259 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	FRRS1	Q6ZNA5	592 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GALNTL5	Q7Z4T8	443 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	NET1	Q7Z628	596 aa	Predicted RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	MARCH3	Q86UD3	253 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CALHM3	Q86XJ0	350 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	KRT73	Q86Y46	540 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	PTOV1	Q86YD1	416 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC30A8	Q8IWU4	369 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	PEX5L	Q8IYB4	626 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	MICU2	Q8IYU8	434 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	FBXW8	Q8N3Y1	598 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	RBMXL3	Q8N7X1	1067 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GATS	Q8NAP1	163 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	TMEM178A	Q8NBL3	297 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	MDS2	Q8NDY4	140 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	TNIP2	Q8NFZ5	429 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	OR4C3	Q8NH37	302 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	BBS10	Q8TAM1	723 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC26A7	Q8TE54	656 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	PAQR8	Q8TEZ7	354 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	FIG4	Q92562	907 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF607	Q96SK3	696 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	SECISBP2	Q96T21	854 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	TREX2	Q9BQ50	279 aa	Predicted RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	THTPA	Q9BU02	230 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	DOHH	Q9BU89	302 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	HES7	Q9BYE0	225 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC25A18	Q9H1K4	315 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	C1orf21	Q9H246	121 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	SDHAF3	Q9NRP4	125 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GMPR2	Q9P2T1	348 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF232	Q9UNY5	417 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	USP22	Q9UPT9	525 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	KLF13	Q9Y2Y9	288 aa	Predicted RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CSAG2	Q9Y5P2	127 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	KLRC4-KLRK1	H3BQV0	150 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	NDUFB5	O43674	189 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PEX1	O43933	1283 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SERPINB7	O75635	380 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	CYP7B1	O75881	506 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PDE9A	O76083	593 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SNX4	O95219	450 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	OXSR1	O95747	527 aa	Predicted RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	IL7R	P16871	459 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	TBXA2R	P21731	343 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	DNASE1L1	P49184	302 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PLGLB1	Q02325	96 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	LARS2	Q15031	903 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	MAPK11	Q15759	364 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	NADK2	Q4G0N4	442 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	TBCEL	Q5QJ74	424 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PDZK1	Q5T2W1	519 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRAMEF8	Q5VWM4	474 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRAMEF7	Q5VXH5	474 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC30A6	Q6NXT4	461 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PACS2	Q86VP3	889 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF227	Q86WZ6	799 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PTRH1	Q86Y79	214 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SULF2	Q8IWU5	870 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	FAM98A	Q8NCA5	519 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	OR52P1P	Q8NH57	321 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PHOSPHO1	Q8TCT1	267 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	GRHL3	Q8TE85	626 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PMM1	Q92871	262 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	MCUR1	Q96AQ8	359 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZG16B	Q96DA0	208 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	FAM173A	Q9BQD7	235 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SPATA5L1	Q9BVQ7	753 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	OSBPL11	Q9BXB4	747 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SAP130	Q9H0E3	1048 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	QRSL1	Q9H0R6	528 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC38A1	Q9H2H9	487 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	RUBCNL	Q9H714	662 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	BCL2L10	Q9HD36	194 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	LUZP4	Q9P127	313 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	ABCD2	Q9UBJ2	740 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	SLC13A4	Q9UKG4	626 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	CNOT11	Q9UKZ1	510 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRPF19	Q9UMS4	504 aa	Known RBP	9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	B3GNT3	Q9Y2A9	372 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	DTNA	Q9Y4J8	743 aa		9.31	□□□□□ -0.92
CPSF7-221	ENST00000543545	NUP214	P35658	2090 aa	Predicted RBP	9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	CACNA1B	Q00975	2339 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	ANKRD33B	A6NCL7	494 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRORSD1P	A6NEY8	169 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	SERINC4	A6NH21	518 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	ALG1L2	C9J202	215 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545		M0QX08	132 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	GNB5	O14775	395 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	GMFG	O60234	142 aa		9.3	□□□□□ -0.92
CPSF7-221	ENST00000543545	KIAA0513	O60268	411 aa		9.3	□□□□□ -0.92

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms