RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	VN1R17P	Q8TDU5	208 aa		4.24	□□□□□ -1.73
PRKDC-208	ENST00000536710	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	4.24	□□□□□ -1.73
PRKDC-208	ENST00000536710	EXOSC3	Q9NQT5	275 aa	Known RBP	4.24	□□□□□ -1.73
PRKDC-208	ENST00000536710	SLC2A6	Q9UGQ3	507 aa		4.24	□□□□□ -1.73
PRKDC-208	ENST00000536710	GMPPB	Q9Y5P6	360 aa		4.24	□□□□□ -1.73
PRKDC-208	ENST00000536710	KIF16B	Q96L93	1317 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	PPIAL4D	F5H284	164 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710		K7EQM0	130 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	OR1F1	O43749	312 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SRPX2	O60687	465 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	RAMP1	O60894	148 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	TBX6	O95947	436 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	BCKDHA	P12694	445 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	PTBP1	P26599	531 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	ATXN7L3	Q14CW9	347 aa	Predicted RBP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	TATDN3	Q17R31	274 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	HIGD2B	Q4VC39	106 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	CFAP157	Q5JU67	520 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	PPP1R42	Q7Z4L9	355 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	ANKRD37	Q7Z713	158 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	IFNE	Q86WN2	208 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SPEM1	Q8N4L4	309 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	NANP	Q8TBE9	248 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	M1AP	Q8TC57	530 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	RAET1E	Q8TD07	263 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	OSTF1	Q92882	214 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	MYLPF	Q96A32	169 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	CASD1	Q96PB1	797 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	ZNF607	Q96SK3	696 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SLC30A2	Q9BRI3	323 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	FEM1A	Q9BSK4	669 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	HCAR1	Q9BXC0	346 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	KRTAP2-2	Q9BYT5	123 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	MEAF6	Q9HAF1	191 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	MRPL39	Q9NYK5	338 aa	Known RBP	4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SENP1	Q9P0U3	644 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	CYTH4	Q9UIA0	394 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	ANAPC7	Q9UJX3	599 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SMC3	Q9UQE7	1217 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	SPACA6	W5XKT8	324 aa		4.23	□□□□□ -1.73
PRKDC-208	ENST00000536710	ZNF840P	A6NDX5	716 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MPHOSPH10	O00566	681 aa	Known RBP	4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	CTAGE5	O15320	804 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MAGEB3	O15480	346 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	BCAS1	O75363	584 aa	Predicted RBP	4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	TRIM3	O75382	744 aa	Predicted RBP	4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MTX2	O75431	263 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	CRLF1	O75462	422 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	NEBL	O76041	1014 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	UMPS	P11172	480 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	FOLR2	P14207	255 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MAGEA9	P43362	315 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	BDKRB1	P46663	353 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	RGS4	P49798	205 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	HNMT	P50135	292 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	RUNX3	Q13761	415 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	CYP51A1	Q16850	503 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	ZNF600	Q6ZNG1	722 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	RGS9BP	Q6ZS82	235 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	NAXD	Q8IW45	347 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	FGFRL1	Q8N441	504 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	TFB1M	Q8WVM0	346 aa	Known RBP	4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	SENP8	Q96LD8	212 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	APOL2	Q9BQE5	337 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	ZNF581	Q9P0T4	197 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	RSPH14	Q9UHP6	348 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	GSTK1	Q9Y2Q3	226 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MRPS7	Q9Y2R9	242 aa	Known RBP	4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	MAD1L1	Q9Y6D9	718 aa		4.22	□□□□□ -1.73
PRKDC-208	ENST00000536710	USP6	P35125	1406 aa		4.21	□□□□□ -1.73
PRKDC-208	ENST00000536710	ZSCAN12	O43309	604 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	HBQ1	P09105	142 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	H2AFZ	P0C0S5	128 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	LAMP1	P11279	417 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	IGFBP5	P24593	272 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	OTX2	P32243	289 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	CDH5	P33151	784 aa	Predicted RBP	4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	OR1D4	P47884	311 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ALDH3B2	P48448	385 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ARFIP1	P53367	373 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	SLC8A3	P57103	927 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	CBX1	P83916	185 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	SELPLG	Q14242	412 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	TMEM52B	Q4KMG9	183 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	EIPR1	Q53HC9	387 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	TEX44	Q53QW1	395 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	DCST2	Q5T1A1	773 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ZNF57	Q68EA5	555 aa	Predicted RBP	4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ACSM5	Q6NUN0	579 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	KCNIP4	Q6PIL6	250 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ACOT1	Q86TX2	421 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	OR2T33	Q8NG76	320 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	AGAP11	Q8TF27	550 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	FAM222B	Q8WU58	562 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	SPRYD4	Q8WW59	207 aa	Predicted RBP	4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	PPP1R16A	Q96I34	528 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	ELOVL3	Q9HB03	270 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	CLEC5A	Q9NY25	188 aa		4.21	□□□□□ -1.74
PRKDC-208	ENST00000536710	RNF14	Q9UBS8	474 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 48 ms