RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 E9PLN8 166 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 NPIPA3F8WFD2 350 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 SCO2O43819 266 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 TRAPPC6AO75865 159 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 ATP5HO75947 161 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 CPSF4O95639 269 aaKnown RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 ZFP36L2P47974 494 aaKnown RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 TRPC1P48995 793 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 CLK3P49761 638 aaKnown RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 STX1BP61266 288 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 RPS26P62854 115 aaKnown RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 IRX1P78414 480 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 EMC4Q5J8M3 183 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 SAXO2Q658L1 398 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 FIGNL1Q6PIW4 674 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 MSANTD1Q6ZTZ1 278 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 C6orf120Q7Z4R8 191 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 ZAR1Q86SH2 424 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 TRIML2Q8N7C3 387 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 FAM83FQ8NEG4 500 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 PHF10Q8WUB8 498 aaKnown RBP13.7□□□□□ -0.22
CPSF1-208ENST00000532560 NEURL3Q96EH8 262 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 SLC35G5Q96KT7 338 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 OR7D2Q96RA2 312 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 DMRTA2Q96SC8 542 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 VKORC1Q9BQB6 163 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 SIKE1Q9BRV8 207 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 TBL1XR1Q9BZK7 514 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 OR2B2Q9GZK3 357 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 EXO5Q9H790 373 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 HHATLQ9HCP6 504 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 SDHAF3Q9NRP4 125 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 PPP4R1LQ9P1A2 415 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 KLHL14Q9P2G3 628 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 PTPN13Q12923 2485 aa13.7□□□□□ -0.22
CPSF1-208ENST00000532560 DUXAA6NLW8 204 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 FIGNL2A6NMB9 653 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 B4DXG7 233 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 ALG1L2C9J202 215 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 ZG16O60844 167 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 OXSR1O95747 527 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-208ENST00000532560 AK1P00568 194 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 ESRRAP11474 423 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-208ENST00000532560 TBXA2RP21731 343 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 SRD5A2P31213 254 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 GXYLT1Q4G148 440 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 NHSL2Q5HYW2 709 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 DCST2Q5T1A1 773 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 CCNJQ5T5M9 372 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 RPTNQ6XPR3 784 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 GALNT10Q86SR1 603 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 CLEC4FQ8N1N0 589 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 FADS6Q8N9I5 356 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 OR5D16Q8NGK9 328 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 OR9I1Q8NGQ6 314 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 PANX1Q96RD7 426 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 SLC35A5Q9BS91 424 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 RTN4RQ9BZR6 473 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 UBQLN4Q9NRR5 601 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 FBXO34Q9NWN3 711 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 FBXL2Q9UKC9 423 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 ACAD8Q9UKU7 415 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 MRPS18CQ9Y3D5 142 aaKnown RBP13.69□□□□□ -0.22
CPSF1-208ENST00000532560 KCNE3Q9Y6H6 103 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 MYO7BQ6PIF6 2116 aa13.69□□□□□ -0.22
CPSF1-208ENST00000532560 NCOA6Q14686 2063 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 IGLV3-32A0A0A0MS00 114 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 C15orf38-AP3S2A0A0A6YYH1 394 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 FAM234BA2RU67 622 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 ANGPTL1O95841 491 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 ATP6V1C1P21283 382 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 MATN1P21941 496 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 CHI3L1P36222 383 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 CDKN2CP42773 168 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 KHKP50053 298 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 ATP4BP51164 291 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 POLR2JP52435 117 aaKnown RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 TXNL4AP83876 142 aaKnown RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 ADORA2A-AS1P86434 159 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 CRYZQ08257 329 aaKnown RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 STX5Q13190 355 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 RIPK1Q13546 671 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 RCAN2Q14206 197 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 GANABQ14697 944 aaKnown RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 TOMM20Q15388 145 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 TIGD2Q4W5G0 525 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 EIPR1Q53HC9 387 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 WIPI1Q5MNZ9 446 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 SWT1Q5T5J6 900 aaKnown RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 WLSQ5T9L3 541 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 OR5M10Q6IEU7 315 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 APOOLQ6UXV4 268 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 C3P1Q6ZMU1 363 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 MARCH3Q86UD3 253 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 CHDHQ8NE62 594 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-208ENST00000532560 OR4K17Q8NGC6 315 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 OR4C3Q8NH37 302 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 INPP5KQ9BT40 448 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 RMND5AQ9H871 391 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 PNPLA3Q9NST1 481 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms