RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ARPC3O15145 178 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 SRPX2O60687 465 aaPredicted RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 SURF6O75683 361 aaKnown RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 VENTXO95231 258 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 NUDT14O95848 222 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 RENP00797 406 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 IL1BP01584 269 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 CAPN1P07384 714 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 IGFBP1P08833 259 aaPredicted RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 TRIM49P0CI25 452 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 TRIM49CP0CI26 452 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 BCKDHAP12694 445 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 H2AFXP16104 143 aaPredicted RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 PGCP20142 388 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 LAP3P28838 519 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PPP2R1BP30154 601 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 CAPGP40121 348 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 OR1D4P47884 311 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 NOVA1P51513 510 aaKnown RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 RPL8P62917 257 aaKnown RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 GSTO1P78417 241 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PAX8Q06710 450 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PEX6Q13608 980 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PDK3Q15120 406 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 SYPL1Q16563 259 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 TMEM44Q2T9K0 475 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 RABL6Q3YEC7 729 aaPredicted RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 TIGITQ495A1 244 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 GGTA1PQ4G0N0 100 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 BOLA3Q53S33 107 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 C10orf120Q5SQS8 335 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 FAM182AQ5T1J6 154 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 SEL1L3Q68CR1 1132 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PVRIGQ6DKI7 326 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PMF1Q6P1K2 205 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 ZNF497Q6ZNH5 498 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 LRRC70Q7Z2Q7 622 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 CATSPER3Q86XQ3 398 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 KRTAP7-1Q8IUC3 87 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 ABHD12Q8N2K0 398 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 C4orf32Q8N8J7 132 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 OR5L2Q8NGL0 311 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 RFESDQ8TAC1 157 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 ZNF671Q8TAW3 534 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 CNIH3Q8TBE1 160 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PIGCQ92535 297 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 TADA1Q96BN2 335 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PELI1Q96FA3 418 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 AMDHD1Q96NU7 426 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 LRRC61Q9BV99 259 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 VPS33BQ9H267 617 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 VCX2Q9H322 139 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 IKZF5Q9H5V7 419 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 GNB4Q9HAV0 340 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 AMBNQ9NP70 447 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 UFSP2Q9NUQ7 469 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 SMOXQ9NWM0 555 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 SIGLEC8Q9NYZ4 499 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 PTBP2Q9UKA9 531 aaKnown RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 BARX2Q9UMQ3 279 aaPredicted RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 CLEC4AQ9UMR7 237 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 RNF24Q9Y225 148 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 NTNG1Q9Y2I2 539 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 MRPL11Q9Y3B7 192 aaKnown RBP2.37□□□□□ -2.03
CD44-234ENST00000531873 SPACA6W5XKT8 324 aa2.37□□□□□ -2.03
CD44-234ENST00000531873 CFAP65Q6ZU64 1925 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 ABCA7Q8IZY2 2146 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 KRTAP16-1A8MUX0 517 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SHISA9B4DS77 424 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 H7C423 109 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 UBXN8O00124 270 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 AP3B1O00203 1094 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 NUDT21O43809 227 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 HMMRO75330 724 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 CA1P00915 261 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 PVRP15151 417 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 DPEP1P16444 411 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SDC1P18827 310 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 CALB2P22676 271 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 HPCAL1P37235 193 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 EMDP50402 254 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 ARHGDIAP52565 204 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 AIF1P55008 147 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 LIM2P55344 173 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 ERVK11-1P61568 191 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 NTHL1P78549 312 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 HMGN5P82970 282 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 MAP2K1Q02750 393 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 CSTF1Q05048 431 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 RGS1Q08116 209 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SLC5A12Q1EHB4 618 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 GLIPR1L2Q4G1C9 344 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 ZNF506Q5JVG8 444 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 LGSNQ5TDP6 509 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 LEMD1Q68G75 181 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 ADAM5Q6NVV9 412 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 FAM71F2Q6NXP2 309 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 DOK6Q6PKX4 331 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 CCBE1Q6UXH8 406 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 TIPARPQ7Z3E1 657 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms