RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 APCDD1Q8J025 514 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 NAGSQ8N159 534 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 FAM58AQ8N1B3 248 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 Q8N9P0 234 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 OR4C5Q8NGB2 326 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 VANGL1Q8TAA9 524 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 KCNG3Q8TAE7 436 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 CHMP6Q96FZ7 201 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 IGSF21Q96ID5 467 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 CCNL2Q96S94 520 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 SLC29A1Q99808 456 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 TSG101Q99816 390 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 SHCBP1LQ9BZQ2 653 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ROPN1BQ9BZX4 212 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 WWP1Q9H0M0 922 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 MTIF3Q9H2K0 278 aaKnown RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 DPEP3Q9H4B8 488 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 C6orf106Q9H6K1 298 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 Q9H8V8 135 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ZNF160Q9HCG1 818 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 MRPL17Q9NRX2 175 aaKnown RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 GPR173Q9NS66 373 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 SPHK1Q9NYA1 384 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 COPS7AQ9UBW8 275 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 PISDQ9UG56 409 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 ERRFI1Q9UJM3 462 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 DDX19BQ9UMR2 479 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 CA5BQ9Y2D0 317 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 RHBDD3Q9Y3P4 386 aa4.26□□□□□ -1.73
CD44-220ENST00000525688 KLF2Q9Y5W3 355 aaPredicted RBP4.26□□□□□ -1.73
CD44-220ENST00000525688 TRAV24A0A0B4J272 114 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 A0A1B0GUH1 482 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 PPIAL4DF5H284 164 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ATP6AP2O75787 350 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ATP5HO75947 161 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 PAPSS2O95340 614 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 MCF2P10911 925 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ITGB6P18564 788 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 TRIM23P36406 574 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RPL21P46778 160 aaKnown RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 CDH4P55283 916 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 FOXG1P55316 489 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 GSDMDP57764 484 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SEC61GP60059 68 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RAB11AP62491 216 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 MYBPC1Q00872 1141 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ENPEPQ07075 957 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 FGL1Q08830 312 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 HYAL1Q12794 435 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 DMP1Q13316 513 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 VEZF1Q14119 521 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RCAN2Q14206 197 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 MAPRE2Q15555 327 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RAB11BQ15907 218 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ACKR1Q16570 336 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ALKBH6Q3KRA9 238 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 HSDL1Q3SXM5 330 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 XKR7Q5GH72 579 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SIRPB2Q5JXA9 342 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 CTSL3PQ5NE16 218 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 PDSS1Q5T2R2 415 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 TMEM53Q6P2H8 277 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 TMEM220Q6QAJ8 160 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 CD164L2Q6UWJ8 174 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 PRSS57Q6UWY2 283 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SIGLEC15Q6ZMC9 328 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-220ENST00000525688 Q6ZPB1 254 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 NDUFAF7Q7L592 441 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 VRK2Q86Y07 508 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 PLD3Q8IV08 490 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 VSTM4Q8IW00 320 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RYBPQ8N488 228 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 GRHL3Q8TE85 626 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 NUDCD2Q8WVJ2 157 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 GGHQ92820 318 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SLCO2A1Q92959 643 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 MCHR2Q969V1 340 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ZBTB9Q96C00 473 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 THOC1Q96FV9 657 aaKnown RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 CASD1Q96PB1 797 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RBM4BQ9BQ04 359 aaKnown RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 UBAC1Q9BSL1 405 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 RBM4Q9BWF3 364 aaKnown RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 C1QTNF4Q9BXJ3 329 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 STRADBQ9C0K7 418 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 IL22Q9GZX6 179 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ZDHHC6Q9H6R6 413 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 ZBTB20Q9HC78 741 aaPredicted RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 PNO1Q9NRX1 252 aaKnown RBP4.25□□□□□ -1.73
CD44-220ENST00000525688 SLC38A7Q9NVC3 462 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 FKBP14Q9NWM8 211 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SLC39A1Q9NY26 324 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SLC2A8Q9NY64 477 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 HACD3Q9P035 362 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 TXNDC16Q9P2K2 825 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 SATB2Q9UPW6 733 aa4.25□□□□□ -1.73
CD44-220ENST00000525688 CCDC162PA2VCL2 907 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 TUBAL3A6NHL2 446 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CASTOR2A6NHX0 329 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms