RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 C18orf25Q96B23 403 aaPredicted RBP4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 SDSLQ96GA7 329 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 SLC41A3Q96GZ6 507 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 C18orf12Q96KH6 178 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 PSKH2Q96QS6 385 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 TMEM121Q9BTD3 319 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 VCX2Q9H322 139 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 HEXA-AS1Q9H8Q6 139 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 APMAPQ9HDC9 416 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 EXOSC3Q9NQT5 275 aaKnown RBP4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 RABL2BQ9UNT1 228 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 SLCO1B1Q9Y6L6 691 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 METP08581 1390 aa4.25□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZSCAN5CA6NGD5 496 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 BTN3A3O00478 584 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 STX7O15400 261 aaKnown RBP4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 SNNO75324 88 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZNF44P15621 663 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 PGCP20142 388 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 UQCRC2P22695 453 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 MAGEA5P43359 124 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 ERVK11-1P61568 191 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 MICAQ29983 383 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 TMEM225Q6GV28 225 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 CYS1Q717R9 158 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 BPIFB2Q8N4F0 458 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 RFESDQ8TAC1 157 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 C7orf34Q96L11 122 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 RIT2Q99578 217 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZBTB18Q99592 522 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 RBM4BQ9BQ04 359 aaKnown RBP4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 DUSP16Q9BY84 665 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 PUS3Q9BZE2 481 aaKnown RBP4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 ELOVL2Q9NXB9 296 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 EHFQ9NZC4 300 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 PIPOXQ9P0Z9 390 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 GNG12Q9UBI6 72 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 RPH3ALQ9UNE2 315 aa4.24□□□□□ -1.73
HMGB1P46-201ENST00000520062 A0A0J9YWU9 116 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 A0A1W2PPR1 153 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZSCAN5BA6NJL1 495 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZNF487B1APH4 448 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 NPIPA7E9PJI5 369 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ARPC3O15145 178 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 LCMT2O60294 686 aaKnown RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 SNX4O95219 450 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 MELTFP08582 738 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 NPIPA8P0DM63 369 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ATP5A1P25705 553 aaKnown RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 RND3P61587 244 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 RGS1Q08116 209 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 CD300CQ08708 224 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 RIPPLY1Q0D2K3 151 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 CYP51A1Q16850 503 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 EXOC3L2Q2M3D2 409 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 OTUD3Q5T2D3 398 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ATF7IP2Q5U623 682 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 GFI1BQ5VTD9 330 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 MEDAGQ5VYS4 303 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 FAM71F2Q6NXP2 309 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 Q6ZTC4 211 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 PRSS48Q7RTY5 328 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 LRRC43Q8N309 656 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 IL1F10Q8WWZ1 152 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 NR4A3Q92570 626 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 IWS1Q96ST2 819 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 SECISBP2Q96T21 854 aaKnown RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZBP1Q9H171 429 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 MEPEQ9NQ76 525 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 AIPL1Q9NZN9 384 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 RCOR3Q9P2K3 495 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 NPIPA1Q9UND3 350 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 MOB4Q9Y3A3 225 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 ASB3Q9Y575 518 aa4.23□□□□□ -1.73
HMGB1P46-201ENST00000520062 RENP00797 406 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 IGHG3P01860 377 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 CAPN1P07384 714 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 H2BFMP0C1H6 154 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 CALB2P22676 271 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 GNPDA1P46926 289 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 OR1D4P47884 311 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 NOVA1P51513 510 aaKnown RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 AP3M2P53677 418 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 EWSR1Q01844 656 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 CYLC2Q14093 348 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 GANABQ14697 944 aaKnown RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 SNAI3Q3KNW1 292 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 CEP85LQ5SZL2 805 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 PMF1Q6P1K2 205 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 C15orf54Q8N8G6 183 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 C17orf47Q8NEP4 570 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 OR13C2Q8NGS9 318 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 OR4Q3Q8NH05 313 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 RPL3LQ92901 407 aaKnown RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 ZNF689Q96CS4 500 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 COQ2Q96H96 371 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 PIWIL1Q96J94 861 aaKnown RBP4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 IMPAD1Q9NX62 359 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 MAD1L1Q9Y6D9 718 aa4.22□□□□□ -1.73
HMGB1P46-201ENST00000520062 PRSS21Q9Y6M0 314 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms