RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 GOLGA8RI6L899 631 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 TNFSF11O14788 317 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 PLOD3O60568 738 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 CSF3P09919 207 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 GFAPP14136 432 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 HNF1AP20823 631 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 ALDH9A1P49189 494 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 LSM11P83369 360 aaKnown RBP eCLIP9.71□□□□□ -0.86
DDX41-216ENST00000513562 PSG6Q00889 435 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 IRF9Q00978 393 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 SQLEQ14534 574 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 P2RY6Q15077 328 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 CYP27C1Q4G0S4 372 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 METTL2BQ6P1Q9 378 aaKnown RBP9.71□□□□□ -0.86
DDX41-216ENST00000513562 ESPNLQ6ZVH7 1005 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 MARCH3Q86UD3 253 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 TDRPQ86YL5 185 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 CCDC116Q8IYX3 515 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 GTPBP8Q8N3Z3 284 aaPredicted RBP9.71□□□□□ -0.86
DDX41-216ENST00000513562 RFLNBQ8N5W9 214 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 OR2V1Q8NHB1 315 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 RNF128Q8TEB7 428 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 NXNL1Q96CM4 212 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 MTBPQ96DY7 904 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 CBLN4Q9NTU7 201 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 TAS2R9Q9NYW1 312 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 VDAC3Q9Y277 283 aa9.71□□□□□ -0.86
DDX41-216ENST00000513562 TNPO3Q9Y5L0 923 aaKnown RBP9.71□□□□□ -0.86
DDX41-216ENST00000513562 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.71□□□□□ -0.867e-8■■■■□ 19.4
DDX41-216ENST00000513562 A0A087WZY1 265 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 TCRBV9S1A1TA0A576 114 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 C7orf72A4D263 438 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 FAM159BA6NKW6 160 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 H7C417 338 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 ABCD4O14678 606 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 NTN1O95631 604 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 ADAP00813 363 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 PSMA4P25789 261 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 CRABP2P29373 138 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 SSTR1P30872 391 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 TTKP33981 857 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 SPRP35270 261 aaPredicted RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 CLK3P49761 638 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 TRA2BP62995 288 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 ZNF155Q12901 538 aaPredicted RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 IFT88Q13099 833 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 ITGADQ13349 1161 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 RAB35Q15286 201 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 GTF2IRD2BQ6EKJ0 949 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 CYS1Q717R9 158 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 BHLHA15Q7RTS1 189 aaPredicted RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 NUFIP2Q7Z417 695 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 GTF2IRD2Q86UP8 949 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 CCDC25Q86WR0 208 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 CENPLQ8N0S6 344 aaPredicted RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 OR7G2Q8NG99 324 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 ABHD3Q8WU67 409 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 HTRA1Q92743 480 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 MSI2Q96DH6 328 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 OSBPL9Q96SU4 736 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 NOL11Q9H8H0 719 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 EML4Q9HC35 981 aaKnown RBP9.7□□□□□ -0.86
DDX41-216ENST00000513562 PFDN4Q9NQP4 134 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 KLHL13Q9P2N7 655 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 SLC12A4Q9UP95 1085 aa9.7□□□□□ -0.86
DDX41-216ENST00000513562 A0A0J9YW62 118 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 LOC100289279A0A1B0GTE1 492 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 TCF21O43680 179 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 GMFGO60234 142 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 COQ9O75208 318 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 IL33O95760 270 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 ANGPTL1O95841 491 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 OPN1LWP04000 364 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 PABPC4LP0CB38 370 aaKnown RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 ARL1P40616 181 aaPredicted RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 CCNG1P51959 295 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 RAC1P63000 192 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 PRR5P85299 388 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 C17orf67Q0P5P2 114 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 TRAF3Q13114 568 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 PPA1Q15181 289 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 RNPS1Q15287 305 aaKnown RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 ZNF239Q16600 458 aaKnown RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 DECR1Q16698 335 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 GGTA1PQ4G0N0 100 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 TMEM201Q5SNT2 666 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 SH2D4BQ5SQS7 431 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 GRTP1Q5TC63 336 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 HBMQ6B0K9 141 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 TTC19Q6DKK2 380 aaPredicted RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 BHLHB9Q6PI77 547 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 APOOLQ6UXV4 268 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 C12orf54Q6X4T0 127 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 SSX8Q7RTT4 187 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 TUSC5Q8IXB3 177 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 SAMD14Q8IZD0 417 aaPredicted RBP9.69□□□□□ -0.86
DDX41-216ENST00000513562 PYROXD1Q8WU10 500 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 KCTD4Q8WVF5 259 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 ZBTB8AQ96BR9 441 aa9.69□□□□□ -0.86
DDX41-216ENST00000513562 C1orf159Q96HA4 380 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms