RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SCN1BQ07699 218 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MAD2L1Q13257 205 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CPTPQ5TA50 214 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 VN1R4Q7Z5H5 301 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 HMGN2P46Q86SG4 172 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 PAQR7Q86WK9 346 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 NAXDQ8IW45 347 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ACOT4Q8N9L9 421 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF431Q8TF32 576 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 NAT6Q93015 286 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TEFMQ96QE5 360 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MS4A8Q9BY19 250 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MMP27Q9H306 513 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 C1GALT1Q9NS00 363 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 AIG1Q9NVV5 245 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 BAIAP2Q9UQB8 552 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 AP3M1Q9Y2T2 418 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 A0A1W2PS29 197 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 C4orf51C9J302 202 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TMPRSS11DO60235 418 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF780AO75290 641 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF806P0C7X5 589 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MAN2A2P49641 1150 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 DUSP3P51452 185 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 PGDP52209 483 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 EMX2Q04743 252 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TGM3Q08188 693 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 FAPQ12884 760 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF528Q3MIS6 628 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 OR4C11Q6IEV9 310 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF613Q6PF04 617 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 B3GLCTQ6Y288 498 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF551Q7Z340 670 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZFAND4Q86XD8 727 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 PROSER1Q86XN7 944 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZDHHC21Q8IVQ6 265 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CCDC116Q8IYX3 515 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CHAC2Q8WUX2 184 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TMEM125Q96AQ2 219 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ART5Q96L15 291 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MAPKAP1Q9BPZ7 522 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 SEC22CQ9BRL7 303 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 AIFM2Q9BRQ8 373 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 NDC1Q9BTX1 674 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ACOT13Q9NPJ3 140 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 OCIAD1Q9NX40 245 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF292O60281 2723 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 FAM221BA6H8Z2 402 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 LRIT2A6NDA9 550 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 FXYD1O00168 92 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 JMJD7P0C870 316 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 KIR3DL1P43629 444 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CAPZA2P47755 286 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 MANFP55145 182 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 KLHL12Q53G59 568 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ESCO2Q56NI9 601 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 METTL2BQ6P1Q9 378 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 FAM122CQ6P4D5 195 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF793Q6ZN11 406 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 SPATA19Q7Z5L4 167 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 WDR53Q7Z5U6 358 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF605Q86T29 641 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ZFP41Q8N8Y5 198 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 SETD9Q8NE22 299 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 OR8K3Q8NH51 312 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 C16orf78Q8WTQ4 265 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TRMT61AQ96FX7 289 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 METTL2AQ96IZ6 378 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 UQCC2Q9BRT2 126 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 SERTAD3Q9UJW9 196 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 ATG4BQ9Y4P1 393 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 PEX16Q9Y5Y5 336 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 LYVE1Q9Y5Y7 322 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CSNK1G3Q9Y6M4 447 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 URADA6NGE7 173 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PRR19A6NJB7 356 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 CDX4O14627 284 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 B3GALT2O43825 422 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PRKNO60260 465 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 GPX3P22352 226 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 RNF144AP50876 292 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 RPS7P62081 194 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 HSD11B2P80365 405 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 KCNC4Q03721 635 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF763Q0D2J5 394 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 CSTF3Q12996 717 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 C21orf62-AS1Q17RA5 79 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 SPIN4Q56A73 249 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 XKR7Q5GH72 579 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 ARHGAP40Q5TG30 622 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 STPG1Q5TH74 334 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 LCN8Q6JVE9 175 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 FAM199XQ6PEV8 388 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 LSRQ86X29 649 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 UBQLNLQ8IYU4 475 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 PROKR1Q8TCW9 393 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 ROPN1LQ96C74 230 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 TMCO6Q96DC7 493 aa8.11□□□□□ -1.11
LIMCH1-209ENST00000509277 MS4A6EQ96DS6 147 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms